Omics Classes

AbortMultipartReadSetUploadRequest

sequenceStoreId

• Type:
• Required: Yes

uploadId

• Type:
• Required: Yes

AcceptShareRequest

shareId

• Type:
• Required: Yes

AcceptShareResponse

status

• Type: typing.Literal['ACTIVATING', 'ACTIVE', 'DELETED', 'DELETING', 'FAILED', 'PENDING']
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ActivateReadSetFilter

status

• Type: typing.Optional[typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']]

createdAfter

• Type: typing.Union[datetime.datetime, str, NoneType]

createdBefore

• Type: typing.Union[datetime.datetime, str, NoneType]

ActivateReadSetJobItem

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

creationTime

• Type:
• Required: Yes

completionTime

• Type: typing.Optional[datetime.datetime]

ActivateReadSetSourceItem

readSetId

• Type:
• Required: Yes

status

• Type: typing.Literal['FAILED', 'FINISHED', 'IN_PROGRESS', 'NOT_STARTED']
• Required: Yes

statusMessage

• Type: typing.Optional[str]

AnnotationImportItemDetail

source

• Type:
• Required: Yes

jobStatus

• Type: typing.Literal['CANCELLED', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

AnnotationImportItemSource

source

• Type:
• Required: Yes

AnnotationImportJobItem

id

• Type:
• Required: Yes

destinationName

• Type:
• Required: Yes

versionName

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

completionTime

• Type: typing.Optional[datetime.datetime]

runLeftNormalization

• Type: typing.Optional[bool]

annotationFields

• Type: typing.Optional[typing.Dict[str, str]]

AnnotationStoreItem

id

• Type:
• Required: Yes

reference

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

storeArn

• Type:
• Required: Yes

name

• Type:
• Required: Yes

storeFormat

• Type: typing.Literal['GFF', 'TSV', 'VCF']
• Required: Yes

description

• Type:
• Required: Yes

sseConfig

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

statusMessage

• Type:
• Required: Yes

storeSizeBytes

• Type:
• Required: Yes

AnnotationStoreVersionItem

storeId

• Type:
• Required: Yes

id

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

versionArn

• Type:
• Required: Yes

name

• Type:
• Required: Yes

versionName

• Type:
• Required: Yes

description

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

statusMessage

• Type:
• Required: Yes

versionSizeBytes

• Type:
• Required: Yes

BaseValidatorModel

Oops! This Pydantic model is currently empty. Stay tuned!

BatchDeleteReadSetRequest

ids

• Type: typing.List[str]
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

BatchDeleteReadSetResponse

errors

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.ReadSetBatchError]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

CancelAnnotationImportRequest

jobId

• Type:
• Required: Yes

CancelRunRequest

id

• Type:
• Required: Yes

CancelVariantImportRequest

jobId

• Type:
• Required: Yes

CompleteMultipartReadSetUploadRequest

sequenceStoreId

• Type:
• Required: Yes

uploadId

• Type:
• Required: Yes

parts

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.CompleteReadSetUploadPartListItem]
• Required: Yes

CompleteMultipartReadSetUploadResponse

readSetId

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

CompleteReadSetUploadPartListItem

partNumber

• Type:
• Required: Yes

partSource

• Type: typing.Literal['SOURCE1', 'SOURCE2']
• Required: Yes

checksum

• Type:
• Required: Yes

CreateAnnotationStoreRequest

storeFormat

• Type: typing.Literal['GFF', 'TSV', 'VCF']
• Required: Yes

reference

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ReferenceItem]

name

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

tags

• Type: typing.Optional[typing.Dict[str, str]]

versionName

• Type: typing.Optional[str]

sseConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.SseConfig]

storeOptions

• Type: typing.Union[aws_resource_validator.pydantic_models.omics.omics_classes.StoreOptions, aws_resource_validator.pydantic_models.omics.omics_classes.StoreOptionsOutput, NoneType]

CreateAnnotationStoreResponse

id

• Type:
• Required: Yes

reference

• Type:
• Required: Yes

storeFormat

• Type: typing.Literal['GFF', 'TSV', 'VCF']
• Required: Yes

storeOptions

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

name

• Type:
• Required: Yes

versionName

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

CreateAnnotationStoreVersionRequest

name

• Type:
• Required: Yes

versionName

• Type:
• Required: Yes

description

• Type: typing.Optional[str]

versionOptions

• Type: typing.Union[aws_resource_validator.pydantic_models.omics.omics_classes.VersionOptions, aws_resource_validator.pydantic_models.omics.omics_classes.VersionOptionsOutput, NoneType]

tags

• Type: typing.Optional[typing.Dict[str, str]]

CreateAnnotationStoreVersionResponse

id

• Type:
• Required: Yes

versionName

• Type:
• Required: Yes

storeId

• Type:
• Required: Yes

versionOptions

• Type:
• Required: Yes

name

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

creationTime

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

CreateMultipartReadSetUploadRequest

sequenceStoreId

• Type:
• Required: Yes

sourceFileType

• Type: typing.Literal['BAM', 'CRAM', 'FASTQ', 'UBAM']
• Required: Yes

subjectId

• Type:
• Required: Yes

sampleId

• Type:
• Required: Yes

name

• Type:
• Required: Yes

clientToken

• Type: typing.Optional[str]

generatedFrom

• Type: typing.Optional[str]

referenceArn

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

tags

• Type: typing.Optional[typing.Dict[str, str]]

CreateMultipartReadSetUploadResponse

sequenceStoreId

• Type:
• Required: Yes

uploadId

• Type:
• Required: Yes

sourceFileType

• Type: typing.Literal['BAM', 'CRAM', 'FASTQ', 'UBAM']
• Required: Yes

subjectId

• Type:
• Required: Yes

sampleId

• Type:
• Required: Yes

generatedFrom

• Type:
• Required: Yes

referenceArn

• Type:
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

tags

• Type: typing.Dict[str, str]
• Required: Yes

creationTime

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

CreateReferenceStoreRequest

name

• Type:
• Required: Yes

description

• Type: typing.Optional[str]

sseConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.SseConfig]

tags

• Type: typing.Optional[typing.Dict[str, str]]

clientToken

• Type: typing.Optional[str]

CreateReferenceStoreResponse

id

• Type:
• Required: Yes

arn

• Type:
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

sseConfig

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

CreateRunCacheRequest

cacheS3Location

• Type:
• Required: Yes

requestId

• Type:
• Required: Yes

cacheBehavior

• Type: typing.Optional[typing.Literal['CACHE_ALWAYS', 'CACHE_ON_FAILURE']]

description

• Type: typing.Optional[str]

name

• Type: typing.Optional[str]

tags

• Type: typing.Optional[typing.Dict[str, str]]

cacheBucketOwnerId

• Type: typing.Optional[str]

CreateRunCacheResponse

arn

• Type:
• Required: Yes

id

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'DELETED', 'FAILED']
• Required: Yes

tags

• Type: typing.Dict[str, str]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

CreateRunGroupRequest

requestId

• Type:
• Required: Yes

name

• Type: typing.Optional[str]

maxCpus

• Type: typing.Optional[int]

maxRuns

• Type: typing.Optional[int]

maxDuration

• Type: typing.Optional[int]

tags

• Type: typing.Optional[typing.Dict[str, str]]

maxGpus

• Type: typing.Optional[int]

CreateRunGroupResponse

arn

• Type:
• Required: Yes

id

• Type:
• Required: Yes

tags

• Type: typing.Dict[str, str]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

CreateSequenceStoreRequest

name

• Type:
• Required: Yes

description

• Type: typing.Optional[str]

sseConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.SseConfig]

tags

• Type: typing.Optional[typing.Dict[str, str]]

clientToken

• Type: typing.Optional[str]

fallbackLocation

• Type: typing.Optional[str]

eTagAlgorithmFamily

• Type: typing.Optional[typing.Literal['MD5up', 'SHA256up', 'SHA512up']]

propagatedSetLevelTags

• Type: typing.Optional[typing.List[str]]

s3AccessConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.S3AccessConfig]

CreateSequenceStoreResponse

id

• Type:
• Required: Yes

arn

• Type:
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

sseConfig

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

fallbackLocation

• Type:
• Required: Yes

eTagAlgorithmFamily

• Type: typing.Literal['MD5up', 'SHA256up', 'SHA512up']
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

statusMessage

• Type:
• Required: Yes

propagatedSetLevelTags

• Type: typing.List[str]
• Required: Yes

s3Access

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

CreateShareRequest

resourceArn

• Type:
• Required: Yes

principalSubscriber

• Type:
• Required: Yes

shareName

• Type: typing.Optional[str]

CreateShareResponse

shareId

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVATING', 'ACTIVE', 'DELETED', 'DELETING', 'FAILED', 'PENDING']
• Required: Yes

shareName

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

CreateVariantStoreRequest

reference

• Type:
• Required: Yes

name

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

tags

• Type: typing.Optional[typing.Dict[str, str]]

sseConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.SseConfig]

CreateVariantStoreResponse

id

• Type:
• Required: Yes

reference

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

name

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

CreateWorkflowRequest

requestId

• Type:
• Required: Yes

name

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

engine

• Type: typing.Optional[typing.Literal['CWL', 'NEXTFLOW', 'WDL']]

definitionZip

• Type: typing.Union[str, bytes, typing.IO[typing.Any], botocore.response.StreamingBody, NoneType]

definitionUri

• Type: typing.Optional[str]

main

• Type: typing.Optional[str]

parameterTemplate

• Type: typing.Optional[typing.Dict[str, aws_resource_validator.pydantic_models.omics.omics_classes.WorkflowParameter]]

storageCapacity

• Type: typing.Optional[int]

tags

• Type: typing.Optional[typing.Dict[str, str]]

accelerators

• Type: typing.Optional[typing.Literal['GPU']]

CreateWorkflowResponse

arn

• Type:
• Required: Yes

id

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETED', 'FAILED', 'INACTIVE', 'UPDATING']
• Required: Yes

tags

• Type: typing.Dict[str, str]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

DeleteAnnotationStoreRequest

name

• Type:
• Required: Yes

force

• Type: typing.Optional[bool]

DeleteAnnotationStoreResponse

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

DeleteAnnotationStoreVersionsRequest

name

• Type:
• Required: Yes

versions

• Type: typing.List[str]
• Required: Yes

force

• Type: typing.Optional[bool]

DeleteAnnotationStoreVersionsResponse

errors

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.VersionDeleteError]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

DeleteReferenceRequest

id

• Type:
• Required: Yes

referenceStoreId

• Type:
• Required: Yes

DeleteReferenceStoreRequest

id

• Type:
• Required: Yes

DeleteRunCacheRequest

id

• Type:
• Required: Yes

DeleteRunGroupRequest

id

• Type:
• Required: Yes

DeleteRunRequest

id

• Type:
• Required: Yes

DeleteS3AccessPolicyRequest

s3AccessPointArn

• Type:
• Required: Yes

DeleteSequenceStoreRequest

id

• Type:
• Required: Yes

DeleteShareRequest

shareId

• Type:
• Required: Yes

DeleteShareResponse

status

• Type: typing.Literal['ACTIVATING', 'ACTIVE', 'DELETED', 'DELETING', 'FAILED', 'PENDING']
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

DeleteVariantStoreRequest

name

• Type:
• Required: Yes

force

• Type: typing.Optional[bool]

DeleteVariantStoreResponse

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

DeleteWorkflowRequest

id

• Type:
• Required: Yes

ETag

algorithm

• Type: typing.Optional[typing.Literal['BAM_MD5up', 'BAM_SHA256up', 'BAM_SHA512up', 'CRAM_MD5up', 'CRAM_SHA256up', 'CRAM_SHA512up', 'FASTQ_MD5up', 'FASTQ_SHA256up', 'FASTQ_SHA512up']]

source1

• Type: typing.Optional[str]

source2

• Type: typing.Optional[str]

EmptyResponseMetadata

ResponseMetadata

• Type:
• Required: Yes

ExportReadSet

readSetId

• Type:
• Required: Yes

ExportReadSetDetail

id

• Type:
• Required: Yes

status

• Type: typing.Literal['FAILED', 'FINISHED', 'IN_PROGRESS', 'NOT_STARTED']
• Required: Yes

statusMessage

• Type: typing.Optional[str]

ExportReadSetFilter

status

• Type: typing.Optional[typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']]

createdAfter

• Type: typing.Union[datetime.datetime, str, NoneType]

createdBefore

• Type: typing.Union[datetime.datetime, str, NoneType]

ExportReadSetJobDetail

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

destination

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

creationTime

• Type:
• Required: Yes

completionTime

• Type: typing.Optional[datetime.datetime]

FileInformation

totalParts

• Type: typing.Optional[int]

partSize

• Type: typing.Optional[int]

contentLength

• Type: typing.Optional[int]

s3Access

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ReadSetS3Access]

Filter

resourceArns

• Type: typing.Optional[typing.List[str]]

status

• Type: typing.Optional[typing.List[typing.Literal['ACTIVATING', 'ACTIVE', 'DELETED', 'DELETING', 'FAILED', 'PENDING']]]

type

• Type: typing.Optional[typing.List[typing.Literal['ANNOTATION_STORE', 'VARIANT_STORE', 'WORKFLOW']]]

FormatOptions

tsvOptions

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.TsvOptions]

vcfOptions

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.VcfOptions]

GetAnnotationImportRequest

jobId

• Type:
• Required: Yes

GetAnnotationImportRequestWait

jobId

• Type:
• Required: Yes

WaiterConfig

• Type:

GetAnnotationImportResponse

id

• Type:
• Required: Yes

destinationName

• Type:
• Required: Yes

versionName

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

statusMessage

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

completionTime

• Type:
• Required: Yes

items

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.AnnotationImportItemDetail]
• Required: Yes

runLeftNormalization

• Type:
• Required: Yes

formatOptions

• Type:
• Required: Yes

annotationFields

• Type: typing.Dict[str, str]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetAnnotationStoreRequest

name

• Type:
• Required: Yes

GetAnnotationStoreRequestWait

name

• Type:
• Required: Yes

WaiterConfig

• Type:

GetAnnotationStoreRequestWaitExtra

name

• Type:
• Required: Yes

WaiterConfig

• Type:

GetAnnotationStoreResponse

id

• Type:
• Required: Yes

reference

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

storeArn

• Type:
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

sseConfig

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

tags

• Type: typing.Dict[str, str]
• Required: Yes

storeOptions

• Type:
• Required: Yes

storeFormat

• Type: typing.Literal['GFF', 'TSV', 'VCF']
• Required: Yes

statusMessage

• Type:
• Required: Yes

storeSizeBytes

• Type:
• Required: Yes

numVersions

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetAnnotationStoreVersionRequest

name

• Type:
• Required: Yes

versionName

• Type:
• Required: Yes

GetAnnotationStoreVersionRequestWait

name

• Type:
• Required: Yes

versionName

• Type:
• Required: Yes

WaiterConfig

• Type:

GetAnnotationStoreVersionRequestWaitExtra

name

• Type:
• Required: Yes

versionName

• Type:
• Required: Yes

WaiterConfig

• Type:

GetAnnotationStoreVersionResponse

storeId

• Type:
• Required: Yes

id

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

versionArn

• Type:
• Required: Yes

name

• Type:
• Required: Yes

versionName

• Type:
• Required: Yes

description

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

tags

• Type: typing.Dict[str, str]
• Required: Yes

versionOptions

• Type:
• Required: Yes

statusMessage

• Type:
• Required: Yes

versionSizeBytes

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetReadSetActivationJobRequest

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

GetReadSetActivationJobRequestWait

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

WaiterConfig

• Type:

GetReadSetActivationJobResponse

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

statusMessage

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

completionTime

• Type:
• Required: Yes

sources

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.ActivateReadSetSourceItem]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetReadSetExportJobRequest

sequenceStoreId

• Type:
• Required: Yes

id

• Type:
• Required: Yes

GetReadSetExportJobRequestWait

sequenceStoreId

• Type:
• Required: Yes

id

• Type:
• Required: Yes

WaiterConfig

• Type:

GetReadSetExportJobResponse

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

destination

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

statusMessage

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

completionTime

• Type:
• Required: Yes

readSets

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.ExportReadSetDetail]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetReadSetImportJobRequest

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

GetReadSetImportJobRequestWait

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

WaiterConfig

• Type:

GetReadSetImportJobResponse

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

statusMessage

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

completionTime

• Type:
• Required: Yes

sources

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.ImportReadSetSourceItem]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetReadSetMetadataRequest

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

GetReadSetMetadataResponse

id

• Type:
• Required: Yes

arn

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

subjectId

• Type:
• Required: Yes

sampleId

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVATING', 'ACTIVE', 'ARCHIVED', 'DELETED', 'DELETING', 'PROCESSING_UPLOAD', 'UPLOAD_FAILED']
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

fileType

• Type: typing.Literal['BAM', 'CRAM', 'FASTQ', 'UBAM']
• Required: Yes

creationTime

• Type:
• Required: Yes

sequenceInformation

• Type:
• Required: Yes

referenceArn

• Type:
• Required: Yes

files

• Type:
• Required: Yes

statusMessage

• Type:
• Required: Yes

creationType

• Type: typing.Literal['IMPORT', 'UPLOAD']
• Required: Yes

etag

• Type:
• Required: Yes

creationJobId

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetReadSetRequest

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

partNumber

• Type:
• Required: Yes

file

• Type: typing.Optional[typing.Literal['INDEX', 'SOURCE1', 'SOURCE2']]

GetReadSetResponse

payload

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetReferenceImportJobRequest

id

• Type:
• Required: Yes

referenceStoreId

• Type:
• Required: Yes

GetReferenceImportJobRequestWait

id

• Type:
• Required: Yes

referenceStoreId

• Type:
• Required: Yes

WaiterConfig

• Type:

GetReferenceImportJobResponse

id

• Type:
• Required: Yes

referenceStoreId

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

statusMessage

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

completionTime

• Type:
• Required: Yes

sources

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.ImportReferenceSourceItem]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetReferenceMetadataRequest

id

• Type:
• Required: Yes

referenceStoreId

• Type:
• Required: Yes

GetReferenceMetadataResponse

id

• Type:
• Required: Yes

arn

• Type:
• Required: Yes

referenceStoreId

• Type:
• Required: Yes

md5

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'DELETED', 'DELETING']
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

files

• Type:
• Required: Yes

creationType

• Type: typing.Literal['IMPORT']
• Required: Yes

creationJobId

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetReferenceRequest

id

• Type:
• Required: Yes

referenceStoreId

• Type:
• Required: Yes

partNumber

• Type:
• Required: Yes

range

• Type: typing.Optional[str]

file

• Type: typing.Optional[typing.Literal['INDEX', 'SOURCE']]

GetReferenceResponse

payload

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetReferenceStoreRequest

id

• Type:
• Required: Yes

GetReferenceStoreResponse

id

• Type:
• Required: Yes

arn

• Type:
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

sseConfig

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetRunCacheRequest

id

• Type:
• Required: Yes

GetRunCacheResponse

arn

• Type:
• Required: Yes

cacheBehavior

• Type: typing.Literal['CACHE_ALWAYS', 'CACHE_ON_FAILURE']
• Required: Yes

cacheBucketOwnerId

• Type:
• Required: Yes

cacheS3Uri

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

description

• Type:
• Required: Yes

id

• Type:
• Required: Yes

name

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'DELETED', 'FAILED']
• Required: Yes

tags

• Type: typing.Dict[str, str]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetRunGroupRequest

id

• Type:
• Required: Yes

GetRunGroupResponse

arn

• Type:
• Required: Yes

id

• Type:
• Required: Yes

name

• Type:
• Required: Yes

maxCpus

• Type:
• Required: Yes

maxRuns

• Type:
• Required: Yes

maxDuration

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

tags

• Type: typing.Dict[str, str]
• Required: Yes

maxGpus

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetRunRequest

id

• Type:
• Required: Yes

export

• Type: typing.Optional[typing.List[typing.Literal['DEFINITION']]]

GetRunRequestWait

id

• Type:
• Required: Yes

export

• Type: typing.Optional[typing.List[typing.Literal['DEFINITION']]]

WaiterConfig

• Type:

GetRunRequestWaitExtra

id

• Type:
• Required: Yes

export

• Type: typing.Optional[typing.List[typing.Literal['DEFINITION']]]

WaiterConfig

• Type:

GetRunResponse

arn

• Type:
• Required: Yes

id

• Type:
• Required: Yes

cacheId

• Type:
• Required: Yes

cacheBehavior

• Type: typing.Literal['CACHE_ALWAYS', 'CACHE_ON_FAILURE']
• Required: Yes

engineVersion

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'COMPLETED', 'DELETED', 'FAILED', 'PENDING', 'RUNNING', 'STARTING', 'STOPPING']
• Required: Yes

workflowId

• Type:
• Required: Yes

workflowType

• Type: typing.Literal['PRIVATE', 'READY2RUN']
• Required: Yes

runId

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

name

• Type:
• Required: Yes

runGroupId

• Type:
• Required: Yes

priority

• Type:
• Required: Yes

definition

• Type:
• Required: Yes

digest

• Type:
• Required: Yes

parameters

• Type: typing.Dict[str, typing.Any]
• Required: Yes

storageCapacity

• Type:
• Required: Yes

outputUri

• Type:
• Required: Yes

logLevel

• Type: typing.Literal['ALL', 'ERROR', 'FATAL', 'OFF']
• Required: Yes

resourceDigests

• Type: typing.Dict[str, str]
• Required: Yes

startedBy

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

startTime

• Type:
• Required: Yes

stopTime

• Type:
• Required: Yes

statusMessage

• Type:
• Required: Yes

tags

• Type: typing.Dict[str, str]
• Required: Yes

accelerators

• Type: typing.Literal['GPU']
• Required: Yes

retentionMode

• Type: typing.Literal['REMOVE', 'RETAIN']
• Required: Yes

failureReason

• Type:
• Required: Yes

logLocation

• Type:
• Required: Yes

uuid

• Type:
• Required: Yes

runOutputUri

• Type:
• Required: Yes

storageType

• Type: typing.Literal['DYNAMIC', 'STATIC']
• Required: Yes

workflowOwnerId

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetRunTaskRequest

id

• Type:
• Required: Yes

taskId

• Type:
• Required: Yes

GetRunTaskRequestWait

id

• Type:
• Required: Yes

taskId

• Type:
• Required: Yes

WaiterConfig

• Type:

GetRunTaskRequestWaitExtra

id

• Type:
• Required: Yes

taskId

• Type:
• Required: Yes

WaiterConfig

• Type:

GetRunTaskResponse

taskId

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'COMPLETED', 'FAILED', 'PENDING', 'RUNNING', 'STARTING', 'STOPPING']
• Required: Yes

name

• Type:
• Required: Yes

cpus

• Type:
• Required: Yes

cacheHit

• Type:
• Required: Yes

cacheS3Uri

• Type:
• Required: Yes

memory

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

startTime

• Type:
• Required: Yes

stopTime

• Type:
• Required: Yes

statusMessage

• Type:
• Required: Yes

logStream

• Type:
• Required: Yes

gpus

• Type:
• Required: Yes

instanceType

• Type:
• Required: Yes

failureReason

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetS3AccessPolicyRequest

s3AccessPointArn

• Type:
• Required: Yes

GetS3AccessPolicyResponse

s3AccessPointArn

• Type:
• Required: Yes

storeId

• Type:
• Required: Yes

storeType

• Type: typing.Literal['REFERENCE_STORE', 'SEQUENCE_STORE']
• Required: Yes

updateTime

• Type:
• Required: Yes

s3AccessPolicy

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetSequenceStoreRequest

id

• Type:
• Required: Yes

GetSequenceStoreResponse

id

• Type:
• Required: Yes

arn

• Type:
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

sseConfig

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

fallbackLocation

• Type:
• Required: Yes

s3Access

• Type:
• Required: Yes

eTagAlgorithmFamily

• Type: typing.Literal['MD5up', 'SHA256up', 'SHA512up']
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

statusMessage

• Type:
• Required: Yes

propagatedSetLevelTags

• Type: typing.List[str]
• Required: Yes

updateTime

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetShareRequest

shareId

• Type:
• Required: Yes

GetShareResponse

share

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetVariantImportRequest

jobId

• Type:
• Required: Yes

GetVariantImportRequestWait

jobId

• Type:
• Required: Yes

WaiterConfig

• Type:

GetVariantImportResponse

id

• Type:
• Required: Yes

destinationName

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

statusMessage

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

completionTime

• Type:
• Required: Yes

items

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.VariantImportItemDetail]
• Required: Yes

runLeftNormalization

• Type:
• Required: Yes

annotationFields

• Type: typing.Dict[str, str]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetVariantStoreRequest

name

• Type:
• Required: Yes

GetVariantStoreRequestWait

name

• Type:
• Required: Yes

WaiterConfig

• Type:

GetVariantStoreRequestWaitExtra

name

• Type:
• Required: Yes

WaiterConfig

• Type:

GetVariantStoreResponse

id

• Type:
• Required: Yes

reference

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

storeArn

• Type:
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

sseConfig

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

tags

• Type: typing.Dict[str, str]
• Required: Yes

statusMessage

• Type:
• Required: Yes

storeSizeBytes

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetWorkflowRequest

id

• Type:
• Required: Yes

type

• Type: typing.Optional[typing.Literal['PRIVATE', 'READY2RUN']]

export

• Type: typing.Optional[typing.List[typing.Literal['DEFINITION']]]

workflowOwnerId

• Type: typing.Optional[str]

GetWorkflowRequestWait

id

• Type:
• Required: Yes

type

• Type: typing.Optional[typing.Literal['PRIVATE', 'READY2RUN']]

export

• Type: typing.Optional[typing.List[typing.Literal['DEFINITION']]]

workflowOwnerId

• Type: typing.Optional[str]

WaiterConfig

• Type:

GetWorkflowResponse

arn

• Type:
• Required: Yes

id

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETED', 'FAILED', 'INACTIVE', 'UPDATING']
• Required: Yes

type

• Type: typing.Literal['PRIVATE', 'READY2RUN']
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

engine

• Type: typing.Literal['CWL', 'NEXTFLOW', 'WDL']
• Required: Yes

definition

• Type:
• Required: Yes

main

• Type:
• Required: Yes

digest

• Type:
• Required: Yes

parameterTemplate

• Type: typing.Dict[str, aws_resource_validator.pydantic_models.omics.omics_classes.WorkflowParameter]
• Required: Yes

storageCapacity

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

statusMessage

• Type:
• Required: Yes

tags

• Type: typing.Dict[str, str]
• Required: Yes

metadata

• Type: typing.Dict[str, str]
• Required: Yes

accelerators

• Type: typing.Literal['GPU']
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ImportReadSetFilter

status

• Type: typing.Optional[typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']]

createdAfter

• Type: typing.Union[datetime.datetime, str, NoneType]

createdBefore

• Type: typing.Union[datetime.datetime, str, NoneType]

ImportReadSetJobItem

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

creationTime

• Type:
• Required: Yes

completionTime

• Type: typing.Optional[datetime.datetime]

ImportReadSetSourceItem

sourceFiles

• Type:
• Required: Yes

sourceFileType

• Type: typing.Literal['BAM', 'CRAM', 'FASTQ', 'UBAM']
• Required: Yes

status

• Type: typing.Literal['FAILED', 'FINISHED', 'IN_PROGRESS', 'NOT_STARTED']
• Required: Yes

subjectId

• Type:
• Required: Yes

sampleId

• Type:
• Required: Yes

statusMessage

• Type: typing.Optional[str]

generatedFrom

• Type: typing.Optional[str]

referenceArn

• Type: typing.Optional[str]

name

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

tags

• Type: typing.Optional[typing.Dict[str, str]]

readSetId

• Type: typing.Optional[str]

ImportReferenceFilter

status

• Type: typing.Optional[typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']]

createdAfter

• Type: typing.Union[datetime.datetime, str, NoneType]

createdBefore

• Type: typing.Union[datetime.datetime, str, NoneType]

ImportReferenceJobItem

id

• Type:
• Required: Yes

referenceStoreId

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

creationTime

• Type:
• Required: Yes

completionTime

• Type: typing.Optional[datetime.datetime]

ImportReferenceSourceItem

status

• Type: typing.Literal['FAILED', 'FINISHED', 'IN_PROGRESS', 'NOT_STARTED']
• Required: Yes

sourceFile

• Type: typing.Optional[str]

statusMessage

• Type: typing.Optional[str]

name

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

tags

• Type: typing.Optional[typing.Dict[str, str]]

referenceId

• Type: typing.Optional[str]

ListAnnotationImportJobsFilter

status

• Type: typing.Optional[typing.Literal['CANCELLED', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']]

storeName

• Type: typing.Optional[str]

ListAnnotationImportJobsRequest

maxResults

• Type: typing.Optional[int]

ids

• Type: typing.Optional[typing.List[str]]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ListAnnotationImportJobsFilter]

ListAnnotationImportJobsRequestPaginate

ids

• Type: typing.Optional[typing.List[str]]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ListAnnotationImportJobsFilter]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.PaginatorConfig]

ListAnnotationImportJobsResponse

annotationImportJobs

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.AnnotationImportJobItem]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

nextToken

• Type: typing.Optional[str]

ListAnnotationStoreVersionsFilter

status

• Type: typing.Optional[typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']]

ListAnnotationStoreVersionsRequest

name

• Type:
• Required: Yes

maxResults

• Type: typing.Optional[int]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ListAnnotationStoreVersionsFilter]

ListAnnotationStoreVersionsRequestPaginate

name

• Type:
• Required: Yes

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ListAnnotationStoreVersionsFilter]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.PaginatorConfig]

ListAnnotationStoreVersionsResponse

annotationStoreVersions

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.AnnotationStoreVersionItem]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

nextToken

• Type: typing.Optional[str]

ListAnnotationStoresFilter

status

• Type: typing.Optional[typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']]

ListAnnotationStoresRequest

ids

• Type: typing.Optional[typing.List[str]]

maxResults

• Type: typing.Optional[int]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ListAnnotationStoresFilter]

ListAnnotationStoresRequestPaginate

ids

• Type: typing.Optional[typing.List[str]]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ListAnnotationStoresFilter]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.PaginatorConfig]

ListAnnotationStoresResponse

annotationStores

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.AnnotationStoreItem]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

nextToken

• Type: typing.Optional[str]

ListMultipartReadSetUploadsRequest

sequenceStoreId

• Type:
• Required: Yes

maxResults

• Type: typing.Optional[int]

nextToken

• Type: typing.Optional[str]

ListMultipartReadSetUploadsRequestPaginate

sequenceStoreId

• Type:
• Required: Yes

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.PaginatorConfig]

ListMultipartReadSetUploadsResponse

uploads

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.MultipartReadSetUploadListItem]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

nextToken

• Type: typing.Optional[str]

ListReadSetActivationJobsRequest

sequenceStoreId

• Type:
• Required: Yes

maxResults

• Type: typing.Optional[int]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ActivateReadSetFilter]

ListReadSetActivationJobsRequestPaginate

sequenceStoreId

• Type:
• Required: Yes

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ActivateReadSetFilter]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.PaginatorConfig]

ListReadSetActivationJobsResponse

activationJobs

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.ActivateReadSetJobItem]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

nextToken

• Type: typing.Optional[str]

ListReadSetExportJobsRequest

sequenceStoreId

• Type:
• Required: Yes

maxResults

• Type: typing.Optional[int]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ExportReadSetFilter]

ListReadSetExportJobsRequestPaginate

sequenceStoreId

• Type:
• Required: Yes

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ExportReadSetFilter]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.PaginatorConfig]

ListReadSetExportJobsResponse

exportJobs

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.ExportReadSetJobDetail]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

nextToken

• Type: typing.Optional[str]

ListReadSetImportJobsRequest

sequenceStoreId

• Type:
• Required: Yes

maxResults

• Type: typing.Optional[int]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ImportReadSetFilter]

ListReadSetImportJobsRequestPaginate

sequenceStoreId

• Type:
• Required: Yes

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ImportReadSetFilter]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.PaginatorConfig]

ListReadSetImportJobsResponse

importJobs

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.ImportReadSetJobItem]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

nextToken

• Type: typing.Optional[str]

ListReadSetUploadPartsRequest

sequenceStoreId

• Type:
• Required: Yes

uploadId

• Type:
• Required: Yes

partSource

• Type: typing.Literal['SOURCE1', 'SOURCE2']
• Required: Yes

maxResults

• Type: typing.Optional[int]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ReadSetUploadPartListFilter]

ListReadSetUploadPartsRequestPaginate

sequenceStoreId

• Type:
• Required: Yes

uploadId

• Type:
• Required: Yes

partSource

• Type: typing.Literal['SOURCE1', 'SOURCE2']
• Required: Yes

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ReadSetUploadPartListFilter]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.PaginatorConfig]

ListReadSetUploadPartsResponse

parts

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.ReadSetUploadPartListItem]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

nextToken

• Type: typing.Optional[str]

ListReadSetsRequest

sequenceStoreId

• Type:
• Required: Yes

maxResults

• Type: typing.Optional[int]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ReadSetFilter]

ListReadSetsRequestPaginate

sequenceStoreId

• Type:
• Required: Yes

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ReadSetFilter]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.PaginatorConfig]

ListReadSetsResponse

readSets

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.ReadSetListItem]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

nextToken

• Type: typing.Optional[str]

ListReferenceImportJobsRequest

referenceStoreId

• Type:
• Required: Yes

maxResults

• Type: typing.Optional[int]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ImportReferenceFilter]

ListReferenceImportJobsRequestPaginate

referenceStoreId

• Type:
• Required: Yes

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ImportReferenceFilter]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.PaginatorConfig]

ListReferenceImportJobsResponse

importJobs

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.ImportReferenceJobItem]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

nextToken

• Type: typing.Optional[str]

ListReferenceStoresRequest

maxResults

• Type: typing.Optional[int]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ReferenceStoreFilter]

ListReferenceStoresRequestPaginate

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ReferenceStoreFilter]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.PaginatorConfig]

ListReferenceStoresResponse

referenceStores

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.ReferenceStoreDetail]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

nextToken

• Type: typing.Optional[str]

ListReferencesRequest

referenceStoreId

• Type:
• Required: Yes

maxResults

• Type: typing.Optional[int]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ReferenceFilter]

ListReferencesRequestPaginate

referenceStoreId

• Type:
• Required: Yes

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ReferenceFilter]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.PaginatorConfig]

ListReferencesResponse

references

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.ReferenceListItem]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

nextToken

• Type: typing.Optional[str]

ListRunCachesRequest

maxResults

• Type: typing.Optional[int]

startingToken

• Type: typing.Optional[str]

ListRunCachesRequestPaginate

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.PaginatorConfig]

ListRunCachesResponse

items

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.RunCacheListItem]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

nextToken

• Type: typing.Optional[str]

ListRunGroupsRequest

name

• Type: typing.Optional[str]

startingToken

• Type: typing.Optional[str]

maxResults

• Type: typing.Optional[int]

ListRunGroupsRequestPaginate

name

• Type: typing.Optional[str]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.PaginatorConfig]

ListRunGroupsResponse

items

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.RunGroupListItem]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

nextToken

• Type: typing.Optional[str]

ListRunTasksRequest

id

• Type:
• Required: Yes

status

• Type: typing.Optional[typing.Literal['CANCELLED', 'COMPLETED', 'FAILED', 'PENDING', 'RUNNING', 'STARTING', 'STOPPING']]

startingToken

• Type: typing.Optional[str]

maxResults

• Type: typing.Optional[int]

ListRunTasksRequestPaginate

id

• Type:
• Required: Yes

status

• Type: typing.Optional[typing.Literal['CANCELLED', 'COMPLETED', 'FAILED', 'PENDING', 'RUNNING', 'STARTING', 'STOPPING']]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.PaginatorConfig]

ListRunTasksResponse

items

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.TaskListItem]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

nextToken

• Type: typing.Optional[str]

ListRunsRequest

name

• Type: typing.Optional[str]

runGroupId

• Type: typing.Optional[str]

startingToken

• Type: typing.Optional[str]

maxResults

• Type: typing.Optional[int]

status

• Type: typing.Optional[typing.Literal['CANCELLED', 'COMPLETED', 'DELETED', 'FAILED', 'PENDING', 'RUNNING', 'STARTING', 'STOPPING']]

ListRunsRequestPaginate

name

• Type: typing.Optional[str]

runGroupId

• Type: typing.Optional[str]

status

• Type: typing.Optional[typing.Literal['CANCELLED', 'COMPLETED', 'DELETED', 'FAILED', 'PENDING', 'RUNNING', 'STARTING', 'STOPPING']]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.PaginatorConfig]

ListRunsResponse

items

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.RunListItem]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

nextToken

• Type: typing.Optional[str]

ListSequenceStoresRequest

maxResults

• Type: typing.Optional[int]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.SequenceStoreFilter]

ListSequenceStoresRequestPaginate

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.SequenceStoreFilter]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.PaginatorConfig]

ListSequenceStoresResponse

sequenceStores

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.SequenceStoreDetail]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

nextToken

• Type: typing.Optional[str]

ListSharesRequest

resourceOwner

• Type: typing.Literal['OTHER', 'SELF']
• Required: Yes

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.Filter]

nextToken

• Type: typing.Optional[str]

maxResults

• Type: typing.Optional[int]

ListSharesRequestPaginate

resourceOwner

• Type: typing.Literal['OTHER', 'SELF']
• Required: Yes

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.Filter]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.PaginatorConfig]

ListSharesResponse

shares

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.ShareDetails]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

nextToken

• Type: typing.Optional[str]

ListTagsForResourceRequest

resourceArn

• Type:
• Required: Yes

ListTagsForResourceResponse

tags

• Type: typing.Dict[str, str]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ListVariantImportJobsFilter

status

• Type: typing.Optional[typing.Literal['CANCELLED', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']]

storeName

• Type: typing.Optional[str]

ListVariantImportJobsRequest

maxResults

• Type: typing.Optional[int]

ids

• Type: typing.Optional[typing.List[str]]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ListVariantImportJobsFilter]

ListVariantImportJobsRequestPaginate

ids

• Type: typing.Optional[typing.List[str]]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ListVariantImportJobsFilter]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.PaginatorConfig]

ListVariantImportJobsResponse

variantImportJobs

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.VariantImportJobItem]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

nextToken

• Type: typing.Optional[str]

ListVariantStoresFilter

status

• Type: typing.Optional[typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']]

ListVariantStoresRequest

maxResults

• Type: typing.Optional[int]

ids

• Type: typing.Optional[typing.List[str]]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ListVariantStoresFilter]

ListVariantStoresRequestPaginate

ids

• Type: typing.Optional[typing.List[str]]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ListVariantStoresFilter]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.PaginatorConfig]

ListVariantStoresResponse

variantStores

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.VariantStoreItem]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

nextToken

• Type: typing.Optional[str]

ListWorkflowsRequest

type

• Type: typing.Optional[typing.Literal['PRIVATE', 'READY2RUN']]

name

• Type: typing.Optional[str]

startingToken

• Type: typing.Optional[str]

maxResults

• Type: typing.Optional[int]

ListWorkflowsRequestPaginate

type

• Type: typing.Optional[typing.Literal['PRIVATE', 'READY2RUN']]

name

• Type: typing.Optional[str]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.PaginatorConfig]

ListWorkflowsResponse

items

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.WorkflowListItem]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

nextToken

• Type: typing.Optional[str]

MultipartReadSetUploadListItem

sequenceStoreId

• Type:
• Required: Yes

uploadId

• Type:
• Required: Yes

sourceFileType

• Type: typing.Literal['BAM', 'CRAM', 'FASTQ', 'UBAM']
• Required: Yes

subjectId

• Type:
• Required: Yes

sampleId

• Type:
• Required: Yes

generatedFrom

• Type:
• Required: Yes

referenceArn

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

name

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

tags

• Type: typing.Optional[typing.Dict[str, str]]

PaginatorConfig

MaxItems

• Type: typing.Optional[int]

PageSize

• Type: typing.Optional[int]

StartingToken

• Type: typing.Optional[str]

PutS3AccessPolicyRequest

s3AccessPointArn

• Type:
• Required: Yes

s3AccessPolicy

• Type:
• Required: Yes

PutS3AccessPolicyResponse

s3AccessPointArn

• Type:
• Required: Yes

storeId

• Type:
• Required: Yes

storeType

• Type: typing.Literal['REFERENCE_STORE', 'SEQUENCE_STORE']
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ReadOptions

sep

• Type: typing.Optional[str]

encoding

• Type: typing.Optional[str]

quote

• Type: typing.Optional[str]

quoteAll

• Type: typing.Optional[bool]

escape

• Type: typing.Optional[str]

escapeQuotes

• Type: typing.Optional[bool]

comment

• Type: typing.Optional[str]

header

• Type: typing.Optional[bool]

lineSep

• Type: typing.Optional[str]

ReadSetBatchError

id

• Type:
• Required: Yes

code

• Type:
• Required: Yes

message

• Type:
• Required: Yes

ReadSetFiles

source1

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.FileInformation]

source2

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.FileInformation]

index

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.FileInformation]

ReadSetFilter

name

• Type: typing.Optional[str]

status

• Type: typing.Optional[typing.Literal['ACTIVATING', 'ACTIVE', 'ARCHIVED', 'DELETED', 'DELETING', 'PROCESSING_UPLOAD', 'UPLOAD_FAILED']]

referenceArn

• Type: typing.Optional[str]

createdAfter

• Type: typing.Union[datetime.datetime, str, NoneType]

createdBefore

• Type: typing.Union[datetime.datetime, str, NoneType]

sampleId

• Type: typing.Optional[str]

subjectId

• Type: typing.Optional[str]

generatedFrom

• Type: typing.Optional[str]

creationType

• Type: typing.Optional[typing.Literal['IMPORT', 'UPLOAD']]

ReadSetListItem

id

• Type:
• Required: Yes

arn

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVATING', 'ACTIVE', 'ARCHIVED', 'DELETED', 'DELETING', 'PROCESSING_UPLOAD', 'UPLOAD_FAILED']
• Required: Yes

fileType

• Type: typing.Literal['BAM', 'CRAM', 'FASTQ', 'UBAM']
• Required: Yes

creationTime

• Type:
• Required: Yes

subjectId

• Type: typing.Optional[str]

sampleId

• Type: typing.Optional[str]

name

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

referenceArn

• Type: typing.Optional[str]

sequenceInformation

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.SequenceInformation]

statusMessage

• Type: typing.Optional[str]

creationType

• Type: typing.Optional[typing.Literal['IMPORT', 'UPLOAD']]

etag

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ETag]

ReadSetS3Access

s3Uri

• Type: typing.Optional[str]

ReadSetUploadPartListFilter

createdAfter

• Type: typing.Union[datetime.datetime, str, NoneType]

createdBefore

• Type: typing.Union[datetime.datetime, str, NoneType]

ReadSetUploadPartListItem

partNumber

• Type:
• Required: Yes

partSize

• Type:
• Required: Yes

partSource

• Type: typing.Literal['SOURCE1', 'SOURCE2']
• Required: Yes

checksum

• Type:
• Required: Yes

creationTime

• Type: typing.Optional[datetime.datetime]

lastUpdatedTime

• Type: typing.Optional[datetime.datetime]

ReferenceFiles

source

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.FileInformation]

index

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.FileInformation]

ReferenceFilter

name

• Type: typing.Optional[str]

md5

• Type: typing.Optional[str]

createdAfter

• Type: typing.Union[datetime.datetime, str, NoneType]

createdBefore

• Type: typing.Union[datetime.datetime, str, NoneType]

ReferenceItem

referenceArn

• Type: typing.Optional[str]

ReferenceListItem

id

• Type:
• Required: Yes

arn

• Type:
• Required: Yes

referenceStoreId

• Type:
• Required: Yes

md5

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

status

• Type: typing.Optional[typing.Literal['ACTIVE', 'DELETED', 'DELETING']]

name

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

ReferenceStoreDetail

arn

• Type:
• Required: Yes

id

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

name

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

sseConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.SseConfig]

ReferenceStoreFilter

name

• Type: typing.Optional[str]

createdAfter

• Type: typing.Union[datetime.datetime, str, NoneType]

createdBefore

• Type: typing.Union[datetime.datetime, str, NoneType]

ResponseMetadata

RequestId

• Type:
• Required: Yes

HTTPStatusCode

• Type:
• Required: Yes

HTTPHeaders

• Type: typing.Dict[str, str]
• Required: Yes

RetryAttempts

• Type:
• Required: Yes

HostId

• Type: typing.Optional[str]

RunCacheListItem

arn

• Type: typing.Optional[str]

cacheBehavior

• Type: typing.Optional[typing.Literal['CACHE_ALWAYS', 'CACHE_ON_FAILURE']]

cacheS3Uri

• Type: typing.Optional[str]

creationTime

• Type: typing.Optional[datetime.datetime]

id

• Type: typing.Optional[str]

name

• Type: typing.Optional[str]

status

• Type: typing.Optional[typing.Literal['ACTIVE', 'DELETED', 'FAILED']]

RunGroupListItem

arn

• Type: typing.Optional[str]

id

• Type: typing.Optional[str]

name

• Type: typing.Optional[str]

maxCpus

• Type: typing.Optional[int]

maxRuns

• Type: typing.Optional[int]

maxDuration

• Type: typing.Optional[int]

creationTime

• Type: typing.Optional[datetime.datetime]

maxGpus

• Type: typing.Optional[int]

RunListItem

arn

• Type: typing.Optional[str]

id

• Type: typing.Optional[str]

status

• Type: typing.Optional[typing.Literal['CANCELLED', 'COMPLETED', 'DELETED', 'FAILED', 'PENDING', 'RUNNING', 'STARTING', 'STOPPING']]

workflowId

• Type: typing.Optional[str]

name

• Type: typing.Optional[str]

priority

• Type: typing.Optional[int]

storageCapacity

• Type: typing.Optional[int]

creationTime

• Type: typing.Optional[datetime.datetime]

startTime

• Type: typing.Optional[datetime.datetime]

stopTime

• Type: typing.Optional[datetime.datetime]

storageType

• Type: typing.Optional[typing.Literal['DYNAMIC', 'STATIC']]

RunLogLocation

engineLogStream

• Type: typing.Optional[str]

runLogStream

• Type: typing.Optional[str]

S3AccessConfig

accessLogLocation

• Type: typing.Optional[str]

SequenceInformation

totalReadCount

• Type: typing.Optional[int]

totalBaseCount

• Type: typing.Optional[int]

generatedFrom

• Type: typing.Optional[str]

alignment

• Type: typing.Optional[str]

SequenceStoreDetail

arn

• Type:
• Required: Yes

id

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

name

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

sseConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.SseConfig]

fallbackLocation

• Type: typing.Optional[str]

eTagAlgorithmFamily

• Type: typing.Optional[typing.Literal['MD5up', 'SHA256up', 'SHA512up']]

status

• Type: typing.Optional[typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']]

statusMessage

• Type: typing.Optional[str]

updateTime

• Type: typing.Optional[datetime.datetime]

SequenceStoreFilter

name

• Type: typing.Optional[str]

createdAfter

• Type: typing.Union[datetime.datetime, str, NoneType]

createdBefore

• Type: typing.Union[datetime.datetime, str, NoneType]

status

• Type: typing.Optional[typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']]

updatedAfter

• Type: typing.Union[datetime.datetime, str, NoneType]

updatedBefore

• Type: typing.Union[datetime.datetime, str, NoneType]

SequenceStoreS3Access

s3Uri

• Type: typing.Optional[str]

s3AccessPointArn

• Type: typing.Optional[str]

accessLogLocation

• Type: typing.Optional[str]

ShareDetails

shareId

• Type: typing.Optional[str]

resourceArn

• Type: typing.Optional[str]

resourceId

• Type: typing.Optional[str]

principalSubscriber

• Type: typing.Optional[str]

ownerId

• Type: typing.Optional[str]

status

• Type: typing.Optional[typing.Literal['ACTIVATING', 'ACTIVE', 'DELETED', 'DELETING', 'FAILED', 'PENDING']]

statusMessage

• Type: typing.Optional[str]

shareName

• Type: typing.Optional[str]

creationTime

• Type: typing.Optional[datetime.datetime]

updateTime

• Type: typing.Optional[datetime.datetime]

SourceFiles

source1

• Type:
• Required: Yes

source2

• Type: typing.Optional[str]

SseConfig

type

• Type: typing.Literal['KMS']
• Required: Yes

keyArn

• Type: typing.Optional[str]

StartAnnotationImportRequest

destinationName

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

items

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.AnnotationImportItemSource]
• Required: Yes

versionName

• Type: typing.Optional[str]

formatOptions

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.FormatOptions]

runLeftNormalization

• Type: typing.Optional[bool]

annotationFields

• Type: typing.Optional[typing.Dict[str, str]]

StartAnnotationImportResponse

jobId

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

StartReadSetActivationJobRequest

sequenceStoreId

• Type:
• Required: Yes

sources

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.StartReadSetActivationJobSourceItem]
• Required: Yes

clientToken

• Type: typing.Optional[str]

StartReadSetActivationJobResponse

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

creationTime

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

StartReadSetActivationJobSourceItem

readSetId

• Type:
• Required: Yes

StartReadSetExportJobRequest

sequenceStoreId

• Type:
• Required: Yes

destination

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

sources

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.ExportReadSet]
• Required: Yes

clientToken

• Type: typing.Optional[str]

StartReadSetExportJobResponse

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

destination

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

creationTime

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

StartReadSetImportJobRequest

sequenceStoreId

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

sources

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.StartReadSetImportJobSourceItem]
• Required: Yes

clientToken

• Type: typing.Optional[str]

StartReadSetImportJobResponse

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

creationTime

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

StartReadSetImportJobSourceItem

sourceFiles

• Type:
• Required: Yes

sourceFileType

• Type: typing.Literal['BAM', 'CRAM', 'FASTQ', 'UBAM']
• Required: Yes

subjectId

• Type:
• Required: Yes

sampleId

• Type:
• Required: Yes

generatedFrom

• Type: typing.Optional[str]

referenceArn

• Type: typing.Optional[str]

name

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

tags

• Type: typing.Optional[typing.Dict[str, str]]

StartReferenceImportJobRequest

referenceStoreId

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

sources

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.StartReferenceImportJobSourceItem]
• Required: Yes

clientToken

• Type: typing.Optional[str]

StartReferenceImportJobResponse

id

• Type:
• Required: Yes

referenceStoreId

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

creationTime

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

StartReferenceImportJobSourceItem

sourceFile

• Type:
• Required: Yes

name

• Type:
• Required: Yes

description

• Type: typing.Optional[str]

tags

• Type: typing.Optional[typing.Dict[str, str]]

StartRunRequest

roleArn

• Type:
• Required: Yes

requestId

• Type:
• Required: Yes

workflowId

• Type: typing.Optional[str]

workflowType

• Type: typing.Optional[typing.Literal['PRIVATE', 'READY2RUN']]

runId

• Type: typing.Optional[str]

name

• Type: typing.Optional[str]

cacheId

• Type: typing.Optional[str]

cacheBehavior

• Type: typing.Optional[typing.Literal['CACHE_ALWAYS', 'CACHE_ON_FAILURE']]

runGroupId

• Type: typing.Optional[str]

priority

• Type: typing.Optional[int]

parameters

• Type: typing.Optional[typing.Dict[str, typing.Any]]

storageCapacity

• Type: typing.Optional[int]

outputUri

• Type: typing.Optional[str]

logLevel

• Type: typing.Optional[typing.Literal['ALL', 'ERROR', 'FATAL', 'OFF']]

tags

• Type: typing.Optional[typing.Dict[str, str]]

retentionMode

• Type: typing.Optional[typing.Literal['REMOVE', 'RETAIN']]

storageType

• Type: typing.Optional[typing.Literal['DYNAMIC', 'STATIC']]

workflowOwnerId

• Type: typing.Optional[str]

StartRunResponse

arn

• Type:
• Required: Yes

id

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'COMPLETED', 'DELETED', 'FAILED', 'PENDING', 'RUNNING', 'STARTING', 'STOPPING']
• Required: Yes

tags

• Type: typing.Dict[str, str]
• Required: Yes

uuid

• Type:
• Required: Yes

runOutputUri

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

StartVariantImportRequest

destinationName

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

items

• Type: typing.List[aws_resource_validator.pydantic_models.omics.omics_classes.VariantImportItemSource]
• Required: Yes

runLeftNormalization

• Type: typing.Optional[bool]

annotationFields

• Type: typing.Optional[typing.Dict[str, str]]

StartVariantImportResponse

jobId

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

StoreOptions

tsvStoreOptions

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.TsvStoreOptions]

StoreOptionsOutput

tsvStoreOptions

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.TsvStoreOptionsOutput]

TagResourceRequest

resourceArn

• Type:
• Required: Yes

tags

• Type: typing.Dict[str, str]
• Required: Yes

TaskListItem

taskId

• Type: typing.Optional[str]

status

• Type: typing.Optional[typing.Literal['CANCELLED', 'COMPLETED', 'FAILED', 'PENDING', 'RUNNING', 'STARTING', 'STOPPING']]

name

• Type: typing.Optional[str]

cpus

• Type: typing.Optional[int]

cacheHit

• Type: typing.Optional[bool]

cacheS3Uri

• Type: typing.Optional[str]

memory

• Type: typing.Optional[int]

creationTime

• Type: typing.Optional[datetime.datetime]

startTime

• Type: typing.Optional[datetime.datetime]

stopTime

• Type: typing.Optional[datetime.datetime]

gpus

• Type: typing.Optional[int]

instanceType

• Type: typing.Optional[str]

TsvOptions

readOptions

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.ReadOptions]

TsvStoreOptions

annotationType

• Type: typing.Optional[typing.Literal['CHR_POS', 'CHR_POS_REF_ALT', 'CHR_START_END_ONE_BASE', 'CHR_START_END_REF_ALT_ONE_BASE', 'CHR_START_END_REF_ALT_ZERO_BASE', 'CHR_START_END_ZERO_BASE', 'GENERIC']]

formatToHeader

• Type: typing.Optional[typing.Dict[typing.Literal['ALT', 'CHR', 'END', 'POS', 'REF', 'START'], str]]

schema

• Type: typing.Optional[typing.List[typing.Dict[str, typing.Literal['BOOLEAN', 'DOUBLE', 'FLOAT', 'INT', 'LONG', 'STRING']]]]

TsvStoreOptionsOutput

annotationType

• Type: typing.Optional[typing.Literal['CHR_POS', 'CHR_POS_REF_ALT', 'CHR_START_END_ONE_BASE', 'CHR_START_END_REF_ALT_ONE_BASE', 'CHR_START_END_REF_ALT_ZERO_BASE', 'CHR_START_END_ZERO_BASE', 'GENERIC']]

formatToHeader

• Type: typing.Optional[typing.Dict[typing.Literal['ALT', 'CHR', 'END', 'POS', 'REF', 'START'], str]]

schema

• Type: typing.Optional[typing.List[typing.Dict[str, typing.Literal['BOOLEAN', 'DOUBLE', 'FLOAT', 'INT', 'LONG', 'STRING']]]]

TsvVersionOptions

annotationType

• Type: typing.Optional[typing.Literal['CHR_POS', 'CHR_POS_REF_ALT', 'CHR_START_END_ONE_BASE', 'CHR_START_END_REF_ALT_ONE_BASE', 'CHR_START_END_REF_ALT_ZERO_BASE', 'CHR_START_END_ZERO_BASE', 'GENERIC']]

formatToHeader

• Type: typing.Optional[typing.Dict[typing.Literal['ALT', 'CHR', 'END', 'POS', 'REF', 'START'], str]]

schema

• Type: typing.Optional[typing.List[typing.Dict[str, typing.Literal['BOOLEAN', 'DOUBLE', 'FLOAT', 'INT', 'LONG', 'STRING']]]]

TsvVersionOptionsOutput

annotationType

• Type: typing.Optional[typing.Literal['CHR_POS', 'CHR_POS_REF_ALT', 'CHR_START_END_ONE_BASE', 'CHR_START_END_REF_ALT_ONE_BASE', 'CHR_START_END_REF_ALT_ZERO_BASE', 'CHR_START_END_ZERO_BASE', 'GENERIC']]

formatToHeader

• Type: typing.Optional[typing.Dict[typing.Literal['ALT', 'CHR', 'END', 'POS', 'REF', 'START'], str]]

schema

• Type: typing.Optional[typing.List[typing.Dict[str, typing.Literal['BOOLEAN', 'DOUBLE', 'FLOAT', 'INT', 'LONG', 'STRING']]]]

UntagResourceRequest

resourceArn

• Type:
• Required: Yes

tagKeys

• Type: typing.List[str]
• Required: Yes

UpdateAnnotationStoreRequest

name

• Type:
• Required: Yes

description

• Type: typing.Optional[str]

UpdateAnnotationStoreResponse

id

• Type:
• Required: Yes

reference

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

storeOptions

• Type:
• Required: Yes

storeFormat

• Type: typing.Literal['GFF', 'TSV', 'VCF']
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

UpdateAnnotationStoreVersionRequest

name

• Type:
• Required: Yes

versionName

• Type:
• Required: Yes

description

• Type: typing.Optional[str]

UpdateAnnotationStoreVersionResponse

storeId

• Type:
• Required: Yes

id

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

name

• Type:
• Required: Yes

versionName

• Type:
• Required: Yes

description

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

UpdateRunCacheRequest

id

• Type:
• Required: Yes

cacheBehavior

• Type: typing.Optional[typing.Literal['CACHE_ALWAYS', 'CACHE_ON_FAILURE']]

description

• Type: typing.Optional[str]

name

• Type: typing.Optional[str]

UpdateRunGroupRequest

id

• Type:
• Required: Yes

name

• Type: typing.Optional[str]

maxCpus

• Type: typing.Optional[int]

maxRuns

• Type: typing.Optional[int]

maxDuration

• Type: typing.Optional[int]

maxGpus

• Type: typing.Optional[int]

UpdateSequenceStoreRequest

id

• Type:
• Required: Yes

name

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

clientToken

• Type: typing.Optional[str]

fallbackLocation

• Type: typing.Optional[str]

propagatedSetLevelTags

• Type: typing.Optional[typing.List[str]]

s3AccessConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.S3AccessConfig]

UpdateSequenceStoreResponse

id

• Type:
• Required: Yes

arn

• Type:
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

sseConfig

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

propagatedSetLevelTags

• Type: typing.List[str]
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

statusMessage

• Type:
• Required: Yes

fallbackLocation

• Type:
• Required: Yes

s3Access

• Type:
• Required: Yes

eTagAlgorithmFamily

• Type: typing.Literal['MD5up', 'SHA256up', 'SHA512up']
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

UpdateVariantStoreRequest

name

• Type:
• Required: Yes

description

• Type: typing.Optional[str]

UpdateVariantStoreResponse

id

• Type:
• Required: Yes

reference

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

UpdateWorkflowRequest

id

• Type:
• Required: Yes

name

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

UploadReadSetPartRequest

sequenceStoreId

• Type:
• Required: Yes

uploadId

• Type:
• Required: Yes

partSource

• Type: typing.Literal['SOURCE1', 'SOURCE2']
• Required: Yes

partNumber

• Type:
• Required: Yes

payload

• Type: typing.Union[str, bytes, typing.IO[typing.Any], botocore.response.StreamingBody]
• Required: Yes

UploadReadSetPartResponse

checksum

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

VariantImportItemDetail

source

• Type:
• Required: Yes

jobStatus

• Type: typing.Literal['CANCELLED', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

statusMessage

• Type: typing.Optional[str]

VariantImportItemSource

source

• Type:
• Required: Yes

VariantImportJobItem

id

• Type:
• Required: Yes

destinationName

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

completionTime

• Type: typing.Optional[datetime.datetime]

runLeftNormalization

• Type: typing.Optional[bool]

annotationFields

• Type: typing.Optional[typing.Dict[str, str]]

VariantStoreItem

id

• Type:
• Required: Yes

reference

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

storeArn

• Type:
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

sseConfig

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

statusMessage

• Type:
• Required: Yes

storeSizeBytes

• Type:
• Required: Yes

VcfOptions

ignoreQualField

• Type: typing.Optional[bool]

ignoreFilterField

• Type: typing.Optional[bool]

VersionDeleteError

versionName

• Type:
• Required: Yes

message

• Type:
• Required: Yes

VersionOptions

tsvVersionOptions

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.TsvVersionOptions]

VersionOptionsOutput

tsvVersionOptions

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics.omics_classes.TsvVersionOptionsOutput]

WaiterConfig

Delay

• Type: typing.Optional[int]

MaxAttempts

• Type: typing.Optional[int]

WorkflowListItem

arn

• Type: typing.Optional[str]

id

• Type: typing.Optional[str]

name

• Type: typing.Optional[str]

status

• Type: typing.Optional[typing.Literal['ACTIVE', 'CREATING', 'DELETED', 'FAILED', 'INACTIVE', 'UPDATING']]

type

• Type: typing.Optional[typing.Literal['PRIVATE', 'READY2RUN']]

digest

• Type: typing.Optional[str]

creationTime

• Type: typing.Optional[datetime.datetime]

metadata

• Type: typing.Optional[typing.Dict[str, str]]

WorkflowParameter

description

• Type: typing.Optional[str]

optional

• Type: typing.Optional[bool]