Omics Classes

AbortMultipartReadSetUploadRequestRequestTypeDef

sequenceStoreId

• Type:
• Required: Yes

uploadId

• Type:
• Required: Yes

AcceptShareRequestRequestTypeDef

shareId

• Type:
• Required: Yes

AcceptShareResponseTypeDef

status

• Type: typing.Literal['ACTIVATING', 'ACTIVE', 'DELETED', 'DELETING', 'FAILED', 'PENDING']
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ActivateReadSetFilterTypeDef

status

• Type: typing.Optional[typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']]

createdAfter

• Type: typing.Union[datetime.datetime, str, NoneType]

createdBefore

• Type: typing.Union[datetime.datetime, str, NoneType]

ActivateReadSetJobItemTypeDef

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

creationTime

• Type:
• Required: Yes

completionTime

• Type: typing.Optional[datetime.datetime]

ActivateReadSetSourceItemTypeDef

readSetId

• Type:
• Required: Yes

status

• Type: typing.Literal['FAILED', 'FINISHED', 'IN_PROGRESS', 'NOT_STARTED']
• Required: Yes

statusMessage

• Type: typing.Optional[str]

AnnotationImportItemDetailTypeDef

source

• Type:
• Required: Yes

jobStatus

• Type: typing.Literal['CANCELLED', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

AnnotationImportItemSourceTypeDef

source

• Type:
• Required: Yes

AnnotationImportJobItemTypeDef

id

• Type:
• Required: Yes

destinationName

• Type:
• Required: Yes

versionName

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

completionTime

• Type: typing.Optional[datetime.datetime]

runLeftNormalization

• Type: typing.Optional[bool]

annotationFields

• Type: typing.Optional[typing.Dict[str, str]]

AnnotationStoreItemTypeDef

id

• Type:
• Required: Yes

reference

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

storeArn

• Type:
• Required: Yes

name

• Type:
• Required: Yes

storeFormat

• Type: typing.Literal['GFF', 'TSV', 'VCF']
• Required: Yes

description

• Type:
• Required: Yes

sseConfig

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

statusMessage

• Type:
• Required: Yes

storeSizeBytes

• Type:
• Required: Yes

AnnotationStoreVersionItemTypeDef

storeId

• Type:
• Required: Yes

id

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

versionArn

• Type:
• Required: Yes

name

• Type:
• Required: Yes

versionName

• Type:
• Required: Yes

description

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

statusMessage

• Type:
• Required: Yes

versionSizeBytes

• Type:
• Required: Yes

BaseValidatorModel

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BatchDeleteReadSetRequestRequestTypeDef

ids

• Type: typing.Sequence[str]
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

BatchDeleteReadSetResponseTypeDef

errors

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.ReadSetBatchErrorTypeDef]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

CancelAnnotationImportRequestRequestTypeDef

jobId

• Type:
• Required: Yes

CancelRunRequestRequestTypeDef

id

• Type:
• Required: Yes

CancelVariantImportRequestRequestTypeDef

jobId

• Type:
• Required: Yes

CompleteMultipartReadSetUploadRequestRequestTypeDef

sequenceStoreId

• Type:
• Required: Yes

uploadId

• Type:
• Required: Yes

parts

• Type: typing.Sequence[aws_resource_validator.pydantic_models.omics_classes.CompleteReadSetUploadPartListItemTypeDef]
• Required: Yes

CompleteMultipartReadSetUploadResponseTypeDef

readSetId

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

CompleteReadSetUploadPartListItemTypeDef

partNumber

• Type:
• Required: Yes

partSource

• Type: typing.Literal['SOURCE1', 'SOURCE2']
• Required: Yes

checksum

• Type:
• Required: Yes

CreateAnnotationStoreRequestRequestTypeDef

storeFormat

• Type: typing.Literal['GFF', 'TSV', 'VCF']
• Required: Yes

reference

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ReferenceItemTypeDef]

name

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

tags

• Type: typing.Optional[typing.Mapping[str, str]]

versionName

• Type: typing.Optional[str]

sseConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.SseConfigTypeDef]

storeOptions

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.StoreOptionsTypeDef]

CreateAnnotationStoreResponseTypeDef

id

• Type:
• Required: Yes

reference

• Type:
• Required: Yes

storeFormat

• Type: typing.Literal['GFF', 'TSV', 'VCF']
• Required: Yes

storeOptions

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

name

• Type:
• Required: Yes

versionName

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

CreateAnnotationStoreVersionRequestRequestTypeDef

name

• Type:
• Required: Yes

versionName

• Type:
• Required: Yes

description

• Type: typing.Optional[str]

versionOptions

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.VersionOptionsTypeDef]

tags

• Type: typing.Optional[typing.Mapping[str, str]]

CreateAnnotationStoreVersionResponseTypeDef

id

• Type:
• Required: Yes

versionName

• Type:
• Required: Yes

storeId

• Type:
• Required: Yes

versionOptions

• Type:
• Required: Yes

name

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

creationTime

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

CreateMultipartReadSetUploadRequestRequestTypeDef

sequenceStoreId

• Type:
• Required: Yes

sourceFileType

• Type: typing.Literal['BAM', 'CRAM', 'FASTQ', 'UBAM']
• Required: Yes

subjectId

• Type:
• Required: Yes

sampleId

• Type:
• Required: Yes

name

• Type:
• Required: Yes

clientToken

• Type: typing.Optional[str]

generatedFrom

• Type: typing.Optional[str]

referenceArn

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

tags

• Type: typing.Optional[typing.Mapping[str, str]]

CreateMultipartReadSetUploadResponseTypeDef

sequenceStoreId

• Type:
• Required: Yes

uploadId

• Type:
• Required: Yes

sourceFileType

• Type: typing.Literal['BAM', 'CRAM', 'FASTQ', 'UBAM']
• Required: Yes

subjectId

• Type:
• Required: Yes

sampleId

• Type:
• Required: Yes

generatedFrom

• Type:
• Required: Yes

referenceArn

• Type:
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

tags

• Type: typing.Dict[str, str]
• Required: Yes

creationTime

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

CreateReferenceStoreRequestRequestTypeDef

name

• Type:
• Required: Yes

description

• Type: typing.Optional[str]

sseConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.SseConfigTypeDef]

tags

• Type: typing.Optional[typing.Mapping[str, str]]

clientToken

• Type: typing.Optional[str]

CreateReferenceStoreResponseTypeDef

id

• Type:
• Required: Yes

arn

• Type:
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

sseConfig

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

CreateRunGroupRequestRequestTypeDef

requestId

• Type:
• Required: Yes

name

• Type: typing.Optional[str]

maxCpus

• Type: typing.Optional[int]

maxRuns

• Type: typing.Optional[int]

maxDuration

• Type: typing.Optional[int]

tags

• Type: typing.Optional[typing.Mapping[str, str]]

maxGpus

• Type: typing.Optional[int]

CreateRunGroupResponseTypeDef

arn

• Type:
• Required: Yes

id

• Type:
• Required: Yes

tags

• Type: typing.Dict[str, str]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

CreateSequenceStoreRequestRequestTypeDef

name

• Type:
• Required: Yes

description

• Type: typing.Optional[str]

sseConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.SseConfigTypeDef]

tags

• Type: typing.Optional[typing.Mapping[str, str]]

clientToken

• Type: typing.Optional[str]

fallbackLocation

• Type: typing.Optional[str]

eTagAlgorithmFamily

• Type: typing.Optional[typing.Literal['MD5up', 'SHA256up', 'SHA512up']]

CreateSequenceStoreResponseTypeDef

id

• Type:
• Required: Yes

arn

• Type:
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

sseConfig

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

fallbackLocation

• Type:
• Required: Yes

eTagAlgorithmFamily

• Type: typing.Literal['MD5up', 'SHA256up', 'SHA512up']
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

CreateShareRequestRequestTypeDef

resourceArn

• Type:
• Required: Yes

principalSubscriber

• Type:
• Required: Yes

shareName

• Type: typing.Optional[str]

CreateShareResponseTypeDef

shareId

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVATING', 'ACTIVE', 'DELETED', 'DELETING', 'FAILED', 'PENDING']
• Required: Yes

shareName

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

CreateVariantStoreRequestRequestTypeDef

reference

• Type:
• Required: Yes

name

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

tags

• Type: typing.Optional[typing.Mapping[str, str]]

sseConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.SseConfigTypeDef]

CreateVariantStoreResponseTypeDef

id

• Type:
• Required: Yes

reference

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

name

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

CreateWorkflowRequestRequestTypeDef

requestId

• Type:
• Required: Yes

name

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

engine

• Type: typing.Optional[typing.Literal['CWL', 'NEXTFLOW', 'WDL']]

definitionZip

• Type: typing.Union[str, bytes, typing.IO[typing.Any], NoneType]

definitionUri

• Type: typing.Optional[str]

main

• Type: typing.Optional[str]

parameterTemplate

• Type: typing.Optional[typing.Mapping[str, aws_resource_validator.pydantic_models.omics_classes.WorkflowParameterTypeDef]]

storageCapacity

• Type: typing.Optional[int]

tags

• Type: typing.Optional[typing.Mapping[str, str]]

accelerators

• Type: typing.Optional[typing.Literal['GPU']]

CreateWorkflowResponseTypeDef

arn

• Type:
• Required: Yes

id

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETED', 'FAILED', 'INACTIVE', 'UPDATING']
• Required: Yes

tags

• Type: typing.Dict[str, str]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

DeleteAnnotationStoreRequestRequestTypeDef

name

• Type:
• Required: Yes

force

• Type: typing.Optional[bool]

DeleteAnnotationStoreResponseTypeDef

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

DeleteAnnotationStoreVersionsRequestRequestTypeDef

name

• Type:
• Required: Yes

versions

• Type: typing.Sequence[str]
• Required: Yes

force

• Type: typing.Optional[bool]

DeleteAnnotationStoreVersionsResponseTypeDef

errors

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.VersionDeleteErrorTypeDef]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

DeleteReferenceRequestRequestTypeDef

id

• Type:
• Required: Yes

referenceStoreId

• Type:
• Required: Yes

DeleteReferenceStoreRequestRequestTypeDef

id

• Type:
• Required: Yes

DeleteRunGroupRequestRequestTypeDef

id

• Type:
• Required: Yes

DeleteRunRequestRequestTypeDef

id

• Type:
• Required: Yes

DeleteSequenceStoreRequestRequestTypeDef

id

• Type:
• Required: Yes

DeleteShareRequestRequestTypeDef

shareId

• Type:
• Required: Yes

DeleteShareResponseTypeDef

status

• Type: typing.Literal['ACTIVATING', 'ACTIVE', 'DELETED', 'DELETING', 'FAILED', 'PENDING']
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

DeleteVariantStoreRequestRequestTypeDef

name

• Type:
• Required: Yes

force

• Type: typing.Optional[bool]

DeleteVariantStoreResponseTypeDef

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

DeleteWorkflowRequestRequestTypeDef

id

• Type:
• Required: Yes

ETagTypeDef

algorithm

• Type: typing.Optional[typing.Literal['BAM_MD5up', 'BAM_SHA256up', 'BAM_SHA512up', 'CRAM_MD5up', 'CRAM_SHA256up', 'CRAM_SHA512up', 'FASTQ_MD5up', 'FASTQ_SHA256up', 'FASTQ_SHA512up']]

source1

• Type: typing.Optional[str]

source2

• Type: typing.Optional[str]

EmptyResponseMetadataTypeDef

ResponseMetadata

• Type:
• Required: Yes

ExportReadSetDetailTypeDef

id

• Type:
• Required: Yes

status

• Type: typing.Literal['FAILED', 'FINISHED', 'IN_PROGRESS', 'NOT_STARTED']
• Required: Yes

statusMessage

• Type: typing.Optional[str]

ExportReadSetFilterTypeDef

status

• Type: typing.Optional[typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']]

createdAfter

• Type: typing.Union[datetime.datetime, str, NoneType]

createdBefore

• Type: typing.Union[datetime.datetime, str, NoneType]

ExportReadSetJobDetailTypeDef

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

destination

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

creationTime

• Type:
• Required: Yes

completionTime

• Type: typing.Optional[datetime.datetime]

ExportReadSetTypeDef

readSetId

• Type:
• Required: Yes

FileInformationTypeDef

totalParts

• Type: typing.Optional[int]

partSize

• Type: typing.Optional[int]

contentLength

• Type: typing.Optional[int]

s3Access

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ReadSetS3AccessTypeDef]

FilterTypeDef

resourceArns

• Type: typing.Optional[typing.Sequence[str]]

status

• Type: typing.Optional[typing.Sequence[typing.Literal['ACTIVATING', 'ACTIVE', 'DELETED', 'DELETING', 'FAILED', 'PENDING']]]

type

• Type: typing.Optional[typing.Sequence[typing.Literal['ANNOTATION_STORE', 'VARIANT_STORE', 'WORKFLOW']]]

FormatOptionsTypeDef

tsvOptions

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.TsvOptionsTypeDef]

vcfOptions

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.VcfOptionsTypeDef]

GetAnnotationImportRequestAnnotationImportJobCreatedWaitTypeDef

jobId

• Type:
• Required: Yes

WaiterConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.WaiterConfigTypeDef]

GetAnnotationImportRequestRequestTypeDef

jobId

• Type:
• Required: Yes

GetAnnotationImportResponseTypeDef

id

• Type:
• Required: Yes

destinationName

• Type:
• Required: Yes

versionName

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

statusMessage

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

completionTime

• Type:
• Required: Yes

items

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.AnnotationImportItemDetailTypeDef]
• Required: Yes

runLeftNormalization

• Type:
• Required: Yes

formatOptions

• Type:
• Required: Yes

annotationFields

• Type: typing.Dict[str, str]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetAnnotationStoreRequestAnnotationStoreCreatedWaitTypeDef

name

• Type:
• Required: Yes

WaiterConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.WaiterConfigTypeDef]

GetAnnotationStoreRequestAnnotationStoreDeletedWaitTypeDef

name

• Type:
• Required: Yes

WaiterConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.WaiterConfigTypeDef]

GetAnnotationStoreRequestRequestTypeDef

name

• Type:
• Required: Yes

GetAnnotationStoreResponseTypeDef

id

• Type:
• Required: Yes

reference

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

storeArn

• Type:
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

sseConfig

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

tags

• Type: typing.Dict[str, str]
• Required: Yes

storeOptions

• Type:
• Required: Yes

storeFormat

• Type: typing.Literal['GFF', 'TSV', 'VCF']
• Required: Yes

statusMessage

• Type:
• Required: Yes

storeSizeBytes

• Type:
• Required: Yes

numVersions

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetAnnotationStoreVersionRequestAnnotationStoreVersionCreatedWaitTypeDef

name

• Type:
• Required: Yes

versionName

• Type:
• Required: Yes

WaiterConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.WaiterConfigTypeDef]

GetAnnotationStoreVersionRequestAnnotationStoreVersionDeletedWaitTypeDef

name

• Type:
• Required: Yes

versionName

• Type:
• Required: Yes

WaiterConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.WaiterConfigTypeDef]

GetAnnotationStoreVersionRequestRequestTypeDef

name

• Type:
• Required: Yes

versionName

• Type:
• Required: Yes

GetAnnotationStoreVersionResponseTypeDef

storeId

• Type:
• Required: Yes

id

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

versionArn

• Type:
• Required: Yes

name

• Type:
• Required: Yes

versionName

• Type:
• Required: Yes

description

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

tags

• Type: typing.Dict[str, str]
• Required: Yes

versionOptions

• Type:
• Required: Yes

statusMessage

• Type:
• Required: Yes

versionSizeBytes

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetReadSetActivationJobRequestReadSetActivationJobCompletedWaitTypeDef

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

WaiterConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.WaiterConfigTypeDef]

GetReadSetActivationJobRequestRequestTypeDef

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

GetReadSetActivationJobResponseTypeDef

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

statusMessage

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

completionTime

• Type:
• Required: Yes

sources

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.ActivateReadSetSourceItemTypeDef]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetReadSetExportJobRequestReadSetExportJobCompletedWaitTypeDef

sequenceStoreId

• Type:
• Required: Yes

id

• Type:
• Required: Yes

WaiterConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.WaiterConfigTypeDef]

GetReadSetExportJobRequestRequestTypeDef

sequenceStoreId

• Type:
• Required: Yes

id

• Type:
• Required: Yes

GetReadSetExportJobResponseTypeDef

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

destination

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

statusMessage

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

completionTime

• Type:
• Required: Yes

readSets

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.ExportReadSetDetailTypeDef]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetReadSetImportJobRequestReadSetImportJobCompletedWaitTypeDef

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

WaiterConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.WaiterConfigTypeDef]

GetReadSetImportJobRequestRequestTypeDef

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

GetReadSetImportJobResponseTypeDef

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

statusMessage

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

completionTime

• Type:
• Required: Yes

sources

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.ImportReadSetSourceItemTypeDef]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetReadSetMetadataRequestRequestTypeDef

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

GetReadSetMetadataResponseTypeDef

id

• Type:
• Required: Yes

arn

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

subjectId

• Type:
• Required: Yes

sampleId

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVATING', 'ACTIVE', 'ARCHIVED', 'DELETED', 'DELETING', 'PROCESSING_UPLOAD', 'UPLOAD_FAILED']
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

fileType

• Type: typing.Literal['BAM', 'CRAM', 'FASTQ', 'UBAM']
• Required: Yes

creationTime

• Type:
• Required: Yes

sequenceInformation

• Type:
• Required: Yes

referenceArn

• Type:
• Required: Yes

files

• Type:
• Required: Yes

statusMessage

• Type:
• Required: Yes

creationType

• Type: typing.Literal['IMPORT', 'UPLOAD']
• Required: Yes

etag

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetReadSetRequestRequestTypeDef

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

partNumber

• Type:
• Required: Yes

file

• Type: typing.Optional[typing.Literal['INDEX', 'SOURCE1', 'SOURCE2']]

GetReadSetResponseTypeDef

payload

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetReferenceImportJobRequestReferenceImportJobCompletedWaitTypeDef

id

• Type:
• Required: Yes

referenceStoreId

• Type:
• Required: Yes

WaiterConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.WaiterConfigTypeDef]

GetReferenceImportJobRequestRequestTypeDef

id

• Type:
• Required: Yes

referenceStoreId

• Type:
• Required: Yes

GetReferenceImportJobResponseTypeDef

id

• Type:
• Required: Yes

referenceStoreId

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

statusMessage

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

completionTime

• Type:
• Required: Yes

sources

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.ImportReferenceSourceItemTypeDef]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetReferenceMetadataRequestRequestTypeDef

id

• Type:
• Required: Yes

referenceStoreId

• Type:
• Required: Yes

GetReferenceMetadataResponseTypeDef

id

• Type:
• Required: Yes

arn

• Type:
• Required: Yes

referenceStoreId

• Type:
• Required: Yes

md5

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'DELETED', 'DELETING']
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

files

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetReferenceRequestRequestTypeDef

id

• Type:
• Required: Yes

referenceStoreId

• Type:
• Required: Yes

partNumber

• Type:
• Required: Yes

range

• Type: typing.Optional[str]

file

• Type: typing.Optional[typing.Literal['INDEX', 'SOURCE']]

GetReferenceResponseTypeDef

payload

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetReferenceStoreRequestRequestTypeDef

id

• Type:
• Required: Yes

GetReferenceStoreResponseTypeDef

id

• Type:
• Required: Yes

arn

• Type:
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

sseConfig

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetRunGroupRequestRequestTypeDef

id

• Type:
• Required: Yes

GetRunGroupResponseTypeDef

arn

• Type:
• Required: Yes

id

• Type:
• Required: Yes

name

• Type:
• Required: Yes

maxCpus

• Type:
• Required: Yes

maxRuns

• Type:
• Required: Yes

maxDuration

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

tags

• Type: typing.Dict[str, str]
• Required: Yes

maxGpus

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetRunRequestRequestTypeDef

id

• Type:
• Required: Yes

export

• Type: typing.Optional[typing.Sequence[typing.Literal['DEFINITION']]]

GetRunRequestRunCompletedWaitTypeDef

id

• Type:
• Required: Yes

export

• Type: typing.Optional[typing.Sequence[typing.Literal['DEFINITION']]]

WaiterConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.WaiterConfigTypeDef]

GetRunRequestRunRunningWaitTypeDef

id

• Type:
• Required: Yes

export

• Type: typing.Optional[typing.Sequence[typing.Literal['DEFINITION']]]

WaiterConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.WaiterConfigTypeDef]

GetRunResponseTypeDef

arn

• Type:
• Required: Yes

id

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'COMPLETED', 'DELETED', 'FAILED', 'PENDING', 'RUNNING', 'STARTING', 'STOPPING']
• Required: Yes

workflowId

• Type:
• Required: Yes

workflowType

• Type: typing.Literal['PRIVATE', 'READY2RUN']
• Required: Yes

runId

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

name

• Type:
• Required: Yes

runGroupId

• Type:
• Required: Yes

priority

• Type:
• Required: Yes

definition

• Type:
• Required: Yes

digest

• Type:
• Required: Yes

parameters

• Type: typing.Dict[str, typing.Any]
• Required: Yes

storageCapacity

• Type:
• Required: Yes

outputUri

• Type:
• Required: Yes

logLevel

• Type: typing.Literal['ALL', 'ERROR', 'FATAL', 'OFF']
• Required: Yes

resourceDigests

• Type: typing.Dict[str, str]
• Required: Yes

startedBy

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

startTime

• Type:
• Required: Yes

stopTime

• Type:
• Required: Yes

statusMessage

• Type:
• Required: Yes

tags

• Type: typing.Dict[str, str]
• Required: Yes

accelerators

• Type: typing.Literal['GPU']
• Required: Yes

retentionMode

• Type: typing.Literal['REMOVE', 'RETAIN']
• Required: Yes

failureReason

• Type:
• Required: Yes

logLocation

• Type:
• Required: Yes

uuid

• Type:
• Required: Yes

runOutputUri

• Type:
• Required: Yes

storageType

• Type: typing.Literal['DYNAMIC', 'STATIC']
• Required: Yes

workflowOwnerId

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetRunTaskRequestRequestTypeDef

id

• Type:
• Required: Yes

taskId

• Type:
• Required: Yes

GetRunTaskRequestTaskCompletedWaitTypeDef

id

• Type:
• Required: Yes

taskId

• Type:
• Required: Yes

WaiterConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.WaiterConfigTypeDef]

GetRunTaskRequestTaskRunningWaitTypeDef

id

• Type:
• Required: Yes

taskId

• Type:
• Required: Yes

WaiterConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.WaiterConfigTypeDef]

GetRunTaskResponseTypeDef

taskId

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'COMPLETED', 'FAILED', 'PENDING', 'RUNNING', 'STARTING', 'STOPPING']
• Required: Yes

name

• Type:
• Required: Yes

cpus

• Type:
• Required: Yes

memory

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

startTime

• Type:
• Required: Yes

stopTime

• Type:
• Required: Yes

statusMessage

• Type:
• Required: Yes

logStream

• Type:
• Required: Yes

gpus

• Type:
• Required: Yes

instanceType

• Type:
• Required: Yes

failureReason

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetSequenceStoreRequestRequestTypeDef

id

• Type:
• Required: Yes

GetSequenceStoreResponseTypeDef

id

• Type:
• Required: Yes

arn

• Type:
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

sseConfig

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

fallbackLocation

• Type:
• Required: Yes

s3Access

• Type:
• Required: Yes

eTagAlgorithmFamily

• Type: typing.Literal['MD5up', 'SHA256up', 'SHA512up']
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetShareRequestRequestTypeDef

shareId

• Type:
• Required: Yes

GetShareResponseTypeDef

share

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetVariantImportRequestRequestTypeDef

jobId

• Type:
• Required: Yes

GetVariantImportRequestVariantImportJobCreatedWaitTypeDef

jobId

• Type:
• Required: Yes

WaiterConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.WaiterConfigTypeDef]

GetVariantImportResponseTypeDef

id

• Type:
• Required: Yes

destinationName

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

statusMessage

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

completionTime

• Type:
• Required: Yes

items

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.VariantImportItemDetailTypeDef]
• Required: Yes

runLeftNormalization

• Type:
• Required: Yes

annotationFields

• Type: typing.Dict[str, str]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetVariantStoreRequestRequestTypeDef

name

• Type:
• Required: Yes

GetVariantStoreRequestVariantStoreCreatedWaitTypeDef

name

• Type:
• Required: Yes

WaiterConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.WaiterConfigTypeDef]

GetVariantStoreRequestVariantStoreDeletedWaitTypeDef

name

• Type:
• Required: Yes

WaiterConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.WaiterConfigTypeDef]

GetVariantStoreResponseTypeDef

id

• Type:
• Required: Yes

reference

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

storeArn

• Type:
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

sseConfig

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

tags

• Type: typing.Dict[str, str]
• Required: Yes

statusMessage

• Type:
• Required: Yes

storeSizeBytes

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

GetWorkflowRequestRequestTypeDef

id

• Type:
• Required: Yes

type

• Type: typing.Optional[typing.Literal['PRIVATE', 'READY2RUN']]

export

• Type: typing.Optional[typing.Sequence[typing.Literal['DEFINITION']]]

workflowOwnerId

• Type: typing.Optional[str]

GetWorkflowRequestWorkflowActiveWaitTypeDef

id

• Type:
• Required: Yes

type

• Type: typing.Optional[typing.Literal['PRIVATE', 'READY2RUN']]

export

• Type: typing.Optional[typing.Sequence[typing.Literal['DEFINITION']]]

workflowOwnerId

• Type: typing.Optional[str]

WaiterConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.WaiterConfigTypeDef]

GetWorkflowResponseTypeDef

arn

• Type:
• Required: Yes

id

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETED', 'FAILED', 'INACTIVE', 'UPDATING']
• Required: Yes

type

• Type: typing.Literal['PRIVATE', 'READY2RUN']
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

engine

• Type: typing.Literal['CWL', 'NEXTFLOW', 'WDL']
• Required: Yes

definition

• Type:
• Required: Yes

main

• Type:
• Required: Yes

digest

• Type:
• Required: Yes

parameterTemplate

• Type: typing.Dict[str, aws_resource_validator.pydantic_models.omics_classes.WorkflowParameterTypeDef]
• Required: Yes

storageCapacity

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

statusMessage

• Type:
• Required: Yes

tags

• Type: typing.Dict[str, str]
• Required: Yes

metadata

• Type: typing.Dict[str, str]
• Required: Yes

accelerators

• Type: typing.Literal['GPU']
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ImportReadSetFilterTypeDef

status

• Type: typing.Optional[typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']]

createdAfter

• Type: typing.Union[datetime.datetime, str, NoneType]

createdBefore

• Type: typing.Union[datetime.datetime, str, NoneType]

ImportReadSetJobItemTypeDef

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

creationTime

• Type:
• Required: Yes

completionTime

• Type: typing.Optional[datetime.datetime]

ImportReadSetSourceItemTypeDef

sourceFiles

• Type:
• Required: Yes

sourceFileType

• Type: typing.Literal['BAM', 'CRAM', 'FASTQ', 'UBAM']
• Required: Yes

status

• Type: typing.Literal['FAILED', 'FINISHED', 'IN_PROGRESS', 'NOT_STARTED']
• Required: Yes

subjectId

• Type:
• Required: Yes

sampleId

• Type:
• Required: Yes

statusMessage

• Type: typing.Optional[str]

generatedFrom

• Type: typing.Optional[str]

referenceArn

• Type: typing.Optional[str]

name

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

tags

• Type: typing.Optional[typing.Dict[str, str]]

ImportReferenceFilterTypeDef

status

• Type: typing.Optional[typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']]

createdAfter

• Type: typing.Union[datetime.datetime, str, NoneType]

createdBefore

• Type: typing.Union[datetime.datetime, str, NoneType]

ImportReferenceJobItemTypeDef

id

• Type:
• Required: Yes

referenceStoreId

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

creationTime

• Type:
• Required: Yes

completionTime

• Type: typing.Optional[datetime.datetime]

ImportReferenceSourceItemTypeDef

status

• Type: typing.Literal['FAILED', 'FINISHED', 'IN_PROGRESS', 'NOT_STARTED']
• Required: Yes

sourceFile

• Type: typing.Optional[str]

statusMessage

• Type: typing.Optional[str]

name

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

tags

• Type: typing.Optional[typing.Dict[str, str]]

ListAnnotationImportJobsFilterTypeDef

status

• Type: typing.Optional[typing.Literal['CANCELLED', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']]

storeName

• Type: typing.Optional[str]

ListAnnotationImportJobsRequestListAnnotationImportJobsPaginateTypeDef

ids

• Type: typing.Optional[typing.Sequence[str]]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ListAnnotationImportJobsFilterTypeDef]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.PaginatorConfigTypeDef]

ListAnnotationImportJobsRequestRequestTypeDef

maxResults

• Type: typing.Optional[int]

ids

• Type: typing.Optional[typing.Sequence[str]]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ListAnnotationImportJobsFilterTypeDef]

ListAnnotationImportJobsResponseTypeDef

annotationImportJobs

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.AnnotationImportJobItemTypeDef]
• Required: Yes

nextToken

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ListAnnotationStoreVersionsFilterTypeDef

status

• Type: typing.Optional[typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']]

ListAnnotationStoreVersionsRequestListAnnotationStoreVersionsPaginateTypeDef

name

• Type:
• Required: Yes

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ListAnnotationStoreVersionsFilterTypeDef]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.PaginatorConfigTypeDef]

ListAnnotationStoreVersionsRequestRequestTypeDef

name

• Type:
• Required: Yes

maxResults

• Type: typing.Optional[int]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ListAnnotationStoreVersionsFilterTypeDef]

ListAnnotationStoreVersionsResponseTypeDef

annotationStoreVersions

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.AnnotationStoreVersionItemTypeDef]
• Required: Yes

nextToken

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ListAnnotationStoresFilterTypeDef

status

• Type: typing.Optional[typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']]

ListAnnotationStoresRequestListAnnotationStoresPaginateTypeDef

ids

• Type: typing.Optional[typing.Sequence[str]]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ListAnnotationStoresFilterTypeDef]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.PaginatorConfigTypeDef]

ListAnnotationStoresRequestRequestTypeDef

ids

• Type: typing.Optional[typing.Sequence[str]]

maxResults

• Type: typing.Optional[int]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ListAnnotationStoresFilterTypeDef]

ListAnnotationStoresResponseTypeDef

annotationStores

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.AnnotationStoreItemTypeDef]
• Required: Yes

nextToken

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ListMultipartReadSetUploadsRequestListMultipartReadSetUploadsPaginateTypeDef

sequenceStoreId

• Type:
• Required: Yes

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.PaginatorConfigTypeDef]

ListMultipartReadSetUploadsRequestRequestTypeDef

sequenceStoreId

• Type:
• Required: Yes

maxResults

• Type: typing.Optional[int]

nextToken

• Type: typing.Optional[str]

ListMultipartReadSetUploadsResponseTypeDef

nextToken

• Type:
• Required: Yes

uploads

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.MultipartReadSetUploadListItemTypeDef]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ListReadSetActivationJobsRequestListReadSetActivationJobsPaginateTypeDef

sequenceStoreId

• Type:
• Required: Yes

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ActivateReadSetFilterTypeDef]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.PaginatorConfigTypeDef]

ListReadSetActivationJobsRequestRequestTypeDef

sequenceStoreId

• Type:
• Required: Yes

maxResults

• Type: typing.Optional[int]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ActivateReadSetFilterTypeDef]

ListReadSetActivationJobsResponseTypeDef

nextToken

• Type:
• Required: Yes

activationJobs

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.ActivateReadSetJobItemTypeDef]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ListReadSetExportJobsRequestListReadSetExportJobsPaginateTypeDef

sequenceStoreId

• Type:
• Required: Yes

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ExportReadSetFilterTypeDef]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.PaginatorConfigTypeDef]

ListReadSetExportJobsRequestRequestTypeDef

sequenceStoreId

• Type:
• Required: Yes

maxResults

• Type: typing.Optional[int]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ExportReadSetFilterTypeDef]

ListReadSetExportJobsResponseTypeDef

nextToken

• Type:
• Required: Yes

exportJobs

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.ExportReadSetJobDetailTypeDef]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ListReadSetImportJobsRequestListReadSetImportJobsPaginateTypeDef

sequenceStoreId

• Type:
• Required: Yes

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ImportReadSetFilterTypeDef]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.PaginatorConfigTypeDef]

ListReadSetImportJobsRequestRequestTypeDef

sequenceStoreId

• Type:
• Required: Yes

maxResults

• Type: typing.Optional[int]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ImportReadSetFilterTypeDef]

ListReadSetImportJobsResponseTypeDef

nextToken

• Type:
• Required: Yes

importJobs

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.ImportReadSetJobItemTypeDef]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ListReadSetUploadPartsRequestListReadSetUploadPartsPaginateTypeDef

sequenceStoreId

• Type:
• Required: Yes

uploadId

• Type:
• Required: Yes

partSource

• Type: typing.Literal['SOURCE1', 'SOURCE2']
• Required: Yes

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ReadSetUploadPartListFilterTypeDef]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.PaginatorConfigTypeDef]

ListReadSetUploadPartsRequestRequestTypeDef

sequenceStoreId

• Type:
• Required: Yes

uploadId

• Type:
• Required: Yes

partSource

• Type: typing.Literal['SOURCE1', 'SOURCE2']
• Required: Yes

maxResults

• Type: typing.Optional[int]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ReadSetUploadPartListFilterTypeDef]

ListReadSetUploadPartsResponseTypeDef

nextToken

• Type:
• Required: Yes

parts

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.ReadSetUploadPartListItemTypeDef]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ListReadSetsRequestListReadSetsPaginateTypeDef

sequenceStoreId

• Type:
• Required: Yes

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ReadSetFilterTypeDef]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.PaginatorConfigTypeDef]

ListReadSetsRequestRequestTypeDef

sequenceStoreId

• Type:
• Required: Yes

maxResults

• Type: typing.Optional[int]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ReadSetFilterTypeDef]

ListReadSetsResponseTypeDef

nextToken

• Type:
• Required: Yes

readSets

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.ReadSetListItemTypeDef]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ListReferenceImportJobsRequestListReferenceImportJobsPaginateTypeDef

referenceStoreId

• Type:
• Required: Yes

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ImportReferenceFilterTypeDef]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.PaginatorConfigTypeDef]

ListReferenceImportJobsRequestRequestTypeDef

referenceStoreId

• Type:
• Required: Yes

maxResults

• Type: typing.Optional[int]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ImportReferenceFilterTypeDef]

ListReferenceImportJobsResponseTypeDef

nextToken

• Type:
• Required: Yes

importJobs

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.ImportReferenceJobItemTypeDef]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ListReferenceStoresRequestListReferenceStoresPaginateTypeDef

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ReferenceStoreFilterTypeDef]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.PaginatorConfigTypeDef]

ListReferenceStoresRequestRequestTypeDef

maxResults

• Type: typing.Optional[int]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ReferenceStoreFilterTypeDef]

ListReferenceStoresResponseTypeDef

nextToken

• Type:
• Required: Yes

referenceStores

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.ReferenceStoreDetailTypeDef]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ListReferencesRequestListReferencesPaginateTypeDef

referenceStoreId

• Type:
• Required: Yes

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ReferenceFilterTypeDef]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.PaginatorConfigTypeDef]

ListReferencesRequestRequestTypeDef

referenceStoreId

• Type:
• Required: Yes

maxResults

• Type: typing.Optional[int]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ReferenceFilterTypeDef]

ListReferencesResponseTypeDef

nextToken

• Type:
• Required: Yes

references

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.ReferenceListItemTypeDef]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ListRunGroupsRequestListRunGroupsPaginateTypeDef

name

• Type: typing.Optional[str]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.PaginatorConfigTypeDef]

ListRunGroupsRequestRequestTypeDef

name

• Type: typing.Optional[str]

startingToken

• Type: typing.Optional[str]

maxResults

• Type: typing.Optional[int]

ListRunGroupsResponseTypeDef

items

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.RunGroupListItemTypeDef]
• Required: Yes

nextToken

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ListRunTasksRequestListRunTasksPaginateTypeDef

id

• Type:
• Required: Yes

status

• Type: typing.Optional[typing.Literal['CANCELLED', 'COMPLETED', 'FAILED', 'PENDING', 'RUNNING', 'STARTING', 'STOPPING']]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.PaginatorConfigTypeDef]

ListRunTasksRequestRequestTypeDef

id

• Type:
• Required: Yes

status

• Type: typing.Optional[typing.Literal['CANCELLED', 'COMPLETED', 'FAILED', 'PENDING', 'RUNNING', 'STARTING', 'STOPPING']]

startingToken

• Type: typing.Optional[str]

maxResults

• Type: typing.Optional[int]

ListRunTasksResponseTypeDef

items

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.TaskListItemTypeDef]
• Required: Yes

nextToken

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ListRunsRequestListRunsPaginateTypeDef

name

• Type: typing.Optional[str]

runGroupId

• Type: typing.Optional[str]

status

• Type: typing.Optional[typing.Literal['CANCELLED', 'COMPLETED', 'DELETED', 'FAILED', 'PENDING', 'RUNNING', 'STARTING', 'STOPPING']]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.PaginatorConfigTypeDef]

ListRunsRequestRequestTypeDef

name

• Type: typing.Optional[str]

runGroupId

• Type: typing.Optional[str]

startingToken

• Type: typing.Optional[str]

maxResults

• Type: typing.Optional[int]

status

• Type: typing.Optional[typing.Literal['CANCELLED', 'COMPLETED', 'DELETED', 'FAILED', 'PENDING', 'RUNNING', 'STARTING', 'STOPPING']]

ListRunsResponseTypeDef

items

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.RunListItemTypeDef]
• Required: Yes

nextToken

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ListSequenceStoresRequestListSequenceStoresPaginateTypeDef

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.SequenceStoreFilterTypeDef]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.PaginatorConfigTypeDef]

ListSequenceStoresRequestRequestTypeDef

maxResults

• Type: typing.Optional[int]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.SequenceStoreFilterTypeDef]

ListSequenceStoresResponseTypeDef

nextToken

• Type:
• Required: Yes

sequenceStores

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.SequenceStoreDetailTypeDef]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ListSharesRequestListSharesPaginateTypeDef

resourceOwner

• Type: typing.Literal['OTHER', 'SELF']
• Required: Yes

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.FilterTypeDef]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.PaginatorConfigTypeDef]

ListSharesRequestRequestTypeDef

resourceOwner

• Type: typing.Literal['OTHER', 'SELF']
• Required: Yes

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.FilterTypeDef]

nextToken

• Type: typing.Optional[str]

maxResults

• Type: typing.Optional[int]

ListSharesResponseTypeDef

shares

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.ShareDetailsTypeDef]
• Required: Yes

nextToken

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ListTagsForResourceRequestRequestTypeDef

resourceArn

• Type:
• Required: Yes

ListTagsForResourceResponseTypeDef

tags

• Type: typing.Dict[str, str]
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ListVariantImportJobsFilterTypeDef

status

• Type: typing.Optional[typing.Literal['CANCELLED', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']]

storeName

• Type: typing.Optional[str]

ListVariantImportJobsRequestListVariantImportJobsPaginateTypeDef

ids

• Type: typing.Optional[typing.Sequence[str]]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ListVariantImportJobsFilterTypeDef]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.PaginatorConfigTypeDef]

ListVariantImportJobsRequestRequestTypeDef

maxResults

• Type: typing.Optional[int]

ids

• Type: typing.Optional[typing.Sequence[str]]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ListVariantImportJobsFilterTypeDef]

ListVariantImportJobsResponseTypeDef

variantImportJobs

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.VariantImportJobItemTypeDef]
• Required: Yes

nextToken

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ListVariantStoresFilterTypeDef

status

• Type: typing.Optional[typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']]

ListVariantStoresRequestListVariantStoresPaginateTypeDef

ids

• Type: typing.Optional[typing.Sequence[str]]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ListVariantStoresFilterTypeDef]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.PaginatorConfigTypeDef]

ListVariantStoresRequestRequestTypeDef

maxResults

• Type: typing.Optional[int]

ids

• Type: typing.Optional[typing.Sequence[str]]

nextToken

• Type: typing.Optional[str]

filter

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ListVariantStoresFilterTypeDef]

ListVariantStoresResponseTypeDef

variantStores

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.VariantStoreItemTypeDef]
• Required: Yes

nextToken

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

ListWorkflowsRequestListWorkflowsPaginateTypeDef

type

• Type: typing.Optional[typing.Literal['PRIVATE', 'READY2RUN']]

name

• Type: typing.Optional[str]

PaginationConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.PaginatorConfigTypeDef]

ListWorkflowsRequestRequestTypeDef

type

• Type: typing.Optional[typing.Literal['PRIVATE', 'READY2RUN']]

name

• Type: typing.Optional[str]

startingToken

• Type: typing.Optional[str]

maxResults

• Type: typing.Optional[int]

ListWorkflowsResponseTypeDef

items

• Type: typing.List[aws_resource_validator.pydantic_models.omics_classes.WorkflowListItemTypeDef]
• Required: Yes

nextToken

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

MultipartReadSetUploadListItemTypeDef

sequenceStoreId

• Type:
• Required: Yes

uploadId

• Type:
• Required: Yes

sourceFileType

• Type: typing.Literal['BAM', 'CRAM', 'FASTQ', 'UBAM']
• Required: Yes

subjectId

• Type:
• Required: Yes

sampleId

• Type:
• Required: Yes

generatedFrom

• Type:
• Required: Yes

referenceArn

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

name

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

tags

• Type: typing.Optional[typing.Dict[str, str]]

PaginatorConfigTypeDef

MaxItems

• Type: typing.Optional[int]

PageSize

• Type: typing.Optional[int]

StartingToken

• Type: typing.Optional[str]

ReadOptionsTypeDef

sep

• Type: typing.Optional[str]

encoding

• Type: typing.Optional[str]

quote

• Type: typing.Optional[str]

quoteAll

• Type: typing.Optional[bool]

escape

• Type: typing.Optional[str]

escapeQuotes

• Type: typing.Optional[bool]

comment

• Type: typing.Optional[str]

header

• Type: typing.Optional[bool]

lineSep

• Type: typing.Optional[str]

ReadSetBatchErrorTypeDef

id

• Type:
• Required: Yes

code

• Type:
• Required: Yes

message

• Type:
• Required: Yes

ReadSetFilesTypeDef

source1

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.FileInformationTypeDef]

source2

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.FileInformationTypeDef]

index

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.FileInformationTypeDef]

ReadSetFilterTypeDef

name

• Type: typing.Optional[str]

status

• Type: typing.Optional[typing.Literal['ACTIVATING', 'ACTIVE', 'ARCHIVED', 'DELETED', 'DELETING', 'PROCESSING_UPLOAD', 'UPLOAD_FAILED']]

referenceArn

• Type: typing.Optional[str]

createdAfter

• Type: typing.Union[datetime.datetime, str, NoneType]

createdBefore

• Type: typing.Union[datetime.datetime, str, NoneType]

sampleId

• Type: typing.Optional[str]

subjectId

• Type: typing.Optional[str]

generatedFrom

• Type: typing.Optional[str]

creationType

• Type: typing.Optional[typing.Literal['IMPORT', 'UPLOAD']]

ReadSetListItemTypeDef

id

• Type:
• Required: Yes

arn

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVATING', 'ACTIVE', 'ARCHIVED', 'DELETED', 'DELETING', 'PROCESSING_UPLOAD', 'UPLOAD_FAILED']
• Required: Yes

fileType

• Type: typing.Literal['BAM', 'CRAM', 'FASTQ', 'UBAM']
• Required: Yes

creationTime

• Type:
• Required: Yes

subjectId

• Type: typing.Optional[str]

sampleId

• Type: typing.Optional[str]

name

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

referenceArn

• Type: typing.Optional[str]

sequenceInformation

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.SequenceInformationTypeDef]

statusMessage

• Type: typing.Optional[str]

creationType

• Type: typing.Optional[typing.Literal['IMPORT', 'UPLOAD']]

etag

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ETagTypeDef]

ReadSetS3AccessTypeDef

s3Uri

• Type: typing.Optional[str]

ReadSetUploadPartListFilterTypeDef

createdAfter

• Type: typing.Union[datetime.datetime, str, NoneType]

createdBefore

• Type: typing.Union[datetime.datetime, str, NoneType]

ReadSetUploadPartListItemTypeDef

partNumber

• Type:
• Required: Yes

partSize

• Type:
• Required: Yes

partSource

• Type: typing.Literal['SOURCE1', 'SOURCE2']
• Required: Yes

checksum

• Type:
• Required: Yes

creationTime

• Type: typing.Optional[datetime.datetime]

lastUpdatedTime

• Type: typing.Optional[datetime.datetime]

ReferenceFilesTypeDef

source

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.FileInformationTypeDef]

index

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.FileInformationTypeDef]

ReferenceFilterTypeDef

name

• Type: typing.Optional[str]

md5

• Type: typing.Optional[str]

createdAfter

• Type: typing.Union[datetime.datetime, str, NoneType]

createdBefore

• Type: typing.Union[datetime.datetime, str, NoneType]

ReferenceItemTypeDef

referenceArn

• Type: typing.Optional[str]

ReferenceListItemTypeDef

id

• Type:
• Required: Yes

arn

• Type:
• Required: Yes

referenceStoreId

• Type:
• Required: Yes

md5

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

status

• Type: typing.Optional[typing.Literal['ACTIVE', 'DELETED', 'DELETING']]

name

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

ReferenceStoreDetailTypeDef

arn

• Type:
• Required: Yes

id

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

name

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

sseConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.SseConfigTypeDef]

ReferenceStoreFilterTypeDef

name

• Type: typing.Optional[str]

createdAfter

• Type: typing.Union[datetime.datetime, str, NoneType]

createdBefore

• Type: typing.Union[datetime.datetime, str, NoneType]

ResponseMetadataTypeDef

RequestId

• Type:
• Required: Yes

HTTPStatusCode

• Type:
• Required: Yes

HTTPHeaders

• Type: typing.Dict[str, str]
• Required: Yes

RetryAttempts

• Type:
• Required: Yes

HostId

• Type: typing.Optional[str]

RunGroupListItemTypeDef

arn

• Type: typing.Optional[str]

id

• Type: typing.Optional[str]

name

• Type: typing.Optional[str]

maxCpus

• Type: typing.Optional[int]

maxRuns

• Type: typing.Optional[int]

maxDuration

• Type: typing.Optional[int]

creationTime

• Type: typing.Optional[datetime.datetime]

maxGpus

• Type: typing.Optional[int]

RunListItemTypeDef

arn

• Type: typing.Optional[str]

id

• Type: typing.Optional[str]

status

• Type: typing.Optional[typing.Literal['CANCELLED', 'COMPLETED', 'DELETED', 'FAILED', 'PENDING', 'RUNNING', 'STARTING', 'STOPPING']]

workflowId

• Type: typing.Optional[str]

name

• Type: typing.Optional[str]

priority

• Type: typing.Optional[int]

storageCapacity

• Type: typing.Optional[int]

creationTime

• Type: typing.Optional[datetime.datetime]

startTime

• Type: typing.Optional[datetime.datetime]

stopTime

• Type: typing.Optional[datetime.datetime]

storageType

• Type: typing.Optional[typing.Literal['DYNAMIC', 'STATIC']]

RunLogLocationTypeDef

engineLogStream

• Type: typing.Optional[str]

runLogStream

• Type: typing.Optional[str]

SequenceInformationTypeDef

totalReadCount

• Type: typing.Optional[int]

totalBaseCount

• Type: typing.Optional[int]

generatedFrom

• Type: typing.Optional[str]

alignment

• Type: typing.Optional[str]

SequenceStoreDetailTypeDef

arn

• Type:
• Required: Yes

id

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

name

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

sseConfig

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.SseConfigTypeDef]

fallbackLocation

• Type: typing.Optional[str]

eTagAlgorithmFamily

• Type: typing.Optional[typing.Literal['MD5up', 'SHA256up', 'SHA512up']]

SequenceStoreFilterTypeDef

name

• Type: typing.Optional[str]

createdAfter

• Type: typing.Union[datetime.datetime, str, NoneType]

createdBefore

• Type: typing.Union[datetime.datetime, str, NoneType]

SequenceStoreS3AccessTypeDef

s3Uri

• Type: typing.Optional[str]

s3AccessPointArn

• Type: typing.Optional[str]

ShareDetailsTypeDef

shareId

• Type: typing.Optional[str]

resourceArn

• Type: typing.Optional[str]

resourceId

• Type: typing.Optional[str]

principalSubscriber

• Type: typing.Optional[str]

ownerId

• Type: typing.Optional[str]

status

• Type: typing.Optional[typing.Literal['ACTIVATING', 'ACTIVE', 'DELETED', 'DELETING', 'FAILED', 'PENDING']]

statusMessage

• Type: typing.Optional[str]

shareName

• Type: typing.Optional[str]

creationTime

• Type: typing.Optional[datetime.datetime]

updateTime

• Type: typing.Optional[datetime.datetime]

SourceFilesTypeDef

source1

• Type:
• Required: Yes

source2

• Type: typing.Optional[str]

SseConfigTypeDef

type

• Type: typing.Literal['KMS']
• Required: Yes

keyArn

• Type: typing.Optional[str]

StartAnnotationImportRequestRequestTypeDef

destinationName

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

items

• Type: typing.Sequence[aws_resource_validator.pydantic_models.omics_classes.AnnotationImportItemSourceTypeDef]
• Required: Yes

versionName

• Type: typing.Optional[str]

formatOptions

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.FormatOptionsTypeDef]

runLeftNormalization

• Type: typing.Optional[bool]

annotationFields

• Type: typing.Optional[typing.Mapping[str, str]]

StartAnnotationImportResponseTypeDef

jobId

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

StartReadSetActivationJobRequestRequestTypeDef

sequenceStoreId

• Type:
• Required: Yes

sources

• Type: typing.Sequence[aws_resource_validator.pydantic_models.omics_classes.StartReadSetActivationJobSourceItemTypeDef]
• Required: Yes

clientToken

• Type: typing.Optional[str]

StartReadSetActivationJobResponseTypeDef

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

creationTime

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

StartReadSetActivationJobSourceItemTypeDef

readSetId

• Type:
• Required: Yes

StartReadSetExportJobRequestRequestTypeDef

sequenceStoreId

• Type:
• Required: Yes

destination

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

sources

• Type: typing.Sequence[aws_resource_validator.pydantic_models.omics_classes.ExportReadSetTypeDef]
• Required: Yes

clientToken

• Type: typing.Optional[str]

StartReadSetExportJobResponseTypeDef

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

destination

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

creationTime

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

StartReadSetImportJobRequestRequestTypeDef

sequenceStoreId

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

sources

• Type: typing.Sequence[aws_resource_validator.pydantic_models.omics_classes.StartReadSetImportJobSourceItemTypeDef]
• Required: Yes

clientToken

• Type: typing.Optional[str]

StartReadSetImportJobResponseTypeDef

id

• Type:
• Required: Yes

sequenceStoreId

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

creationTime

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

StartReadSetImportJobSourceItemTypeDef

sourceFiles

• Type:
• Required: Yes

sourceFileType

• Type: typing.Literal['BAM', 'CRAM', 'FASTQ', 'UBAM']
• Required: Yes

subjectId

• Type:
• Required: Yes

sampleId

• Type:
• Required: Yes

generatedFrom

• Type: typing.Optional[str]

referenceArn

• Type: typing.Optional[str]

name

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

tags

• Type: typing.Optional[typing.Mapping[str, str]]

StartReferenceImportJobRequestRequestTypeDef

referenceStoreId

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

sources

• Type: typing.Sequence[aws_resource_validator.pydantic_models.omics_classes.StartReferenceImportJobSourceItemTypeDef]
• Required: Yes

clientToken

• Type: typing.Optional[str]

StartReferenceImportJobResponseTypeDef

id

• Type:
• Required: Yes

referenceStoreId

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'CANCELLING', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

creationTime

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

StartReferenceImportJobSourceItemTypeDef

sourceFile

• Type:
• Required: Yes

name

• Type:
• Required: Yes

description

• Type: typing.Optional[str]

tags

• Type: typing.Optional[typing.Mapping[str, str]]

StartRunRequestRequestTypeDef

roleArn

• Type:
• Required: Yes

requestId

• Type:
• Required: Yes

workflowId

• Type: typing.Optional[str]

workflowType

• Type: typing.Optional[typing.Literal['PRIVATE', 'READY2RUN']]

runId

• Type: typing.Optional[str]

name

• Type: typing.Optional[str]

runGroupId

• Type: typing.Optional[str]

priority

• Type: typing.Optional[int]

parameters

• Type: typing.Optional[typing.Mapping[str, typing.Any]]

storageCapacity

• Type: typing.Optional[int]

outputUri

• Type: typing.Optional[str]

logLevel

• Type: typing.Optional[typing.Literal['ALL', 'ERROR', 'FATAL', 'OFF']]

tags

• Type: typing.Optional[typing.Mapping[str, str]]

retentionMode

• Type: typing.Optional[typing.Literal['REMOVE', 'RETAIN']]

storageType

• Type: typing.Optional[typing.Literal['DYNAMIC', 'STATIC']]

workflowOwnerId

• Type: typing.Optional[str]

StartRunResponseTypeDef

arn

• Type:
• Required: Yes

id

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'COMPLETED', 'DELETED', 'FAILED', 'PENDING', 'RUNNING', 'STARTING', 'STOPPING']
• Required: Yes

tags

• Type: typing.Dict[str, str]
• Required: Yes

uuid

• Type:
• Required: Yes

runOutputUri

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

StartVariantImportRequestRequestTypeDef

destinationName

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

items

• Type: typing.Sequence[aws_resource_validator.pydantic_models.omics_classes.VariantImportItemSourceTypeDef]
• Required: Yes

runLeftNormalization

• Type: typing.Optional[bool]

annotationFields

• Type: typing.Optional[typing.Mapping[str, str]]

StartVariantImportResponseTypeDef

jobId

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

StoreOptionsOutputTypeDef

tsvStoreOptions

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.TsvStoreOptionsOutputTypeDef]

StoreOptionsTypeDef

tsvStoreOptions

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.TsvStoreOptionsTypeDef]

TagResourceRequestRequestTypeDef

resourceArn

• Type:
• Required: Yes

tags

• Type: typing.Mapping[str, str]
• Required: Yes

TaskListItemTypeDef

taskId

• Type: typing.Optional[str]

status

• Type: typing.Optional[typing.Literal['CANCELLED', 'COMPLETED', 'FAILED', 'PENDING', 'RUNNING', 'STARTING', 'STOPPING']]

name

• Type: typing.Optional[str]

cpus

• Type: typing.Optional[int]

memory

• Type: typing.Optional[int]

creationTime

• Type: typing.Optional[datetime.datetime]

startTime

• Type: typing.Optional[datetime.datetime]

stopTime

• Type: typing.Optional[datetime.datetime]

gpus

• Type: typing.Optional[int]

instanceType

• Type: typing.Optional[str]

TsvOptionsTypeDef

readOptions

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.ReadOptionsTypeDef]

TsvStoreOptionsOutputTypeDef

annotationType

• Type: typing.Optional[typing.Literal['CHR_POS', 'CHR_POS_REF_ALT', 'CHR_START_END_ONE_BASE', 'CHR_START_END_REF_ALT_ONE_BASE', 'CHR_START_END_REF_ALT_ZERO_BASE', 'CHR_START_END_ZERO_BASE', 'GENERIC']]

formatToHeader

• Type: typing.Optional[typing.Dict[typing.Literal['ALT', 'CHR', 'END', 'POS', 'REF', 'START'], str]]

schema

• Type: typing.Optional[typing.List[typing.Dict[str, typing.Literal['BOOLEAN', 'DOUBLE', 'FLOAT', 'INT', 'LONG', 'STRING']]]]

TsvStoreOptionsTypeDef

annotationType

• Type: typing.Optional[typing.Literal['CHR_POS', 'CHR_POS_REF_ALT', 'CHR_START_END_ONE_BASE', 'CHR_START_END_REF_ALT_ONE_BASE', 'CHR_START_END_REF_ALT_ZERO_BASE', 'CHR_START_END_ZERO_BASE', 'GENERIC']]

formatToHeader

• Type: typing.Optional[typing.Mapping[typing.Literal['ALT', 'CHR', 'END', 'POS', 'REF', 'START'], str]]

schema

• Type: typing.Optional[typing.Sequence[typing.Mapping[str, typing.Literal['BOOLEAN', 'DOUBLE', 'FLOAT', 'INT', 'LONG', 'STRING']]]]

TsvVersionOptionsOutputTypeDef

annotationType

• Type: typing.Optional[typing.Literal['CHR_POS', 'CHR_POS_REF_ALT', 'CHR_START_END_ONE_BASE', 'CHR_START_END_REF_ALT_ONE_BASE', 'CHR_START_END_REF_ALT_ZERO_BASE', 'CHR_START_END_ZERO_BASE', 'GENERIC']]

formatToHeader

• Type: typing.Optional[typing.Dict[typing.Literal['ALT', 'CHR', 'END', 'POS', 'REF', 'START'], str]]

schema

• Type: typing.Optional[typing.List[typing.Dict[str, typing.Literal['BOOLEAN', 'DOUBLE', 'FLOAT', 'INT', 'LONG', 'STRING']]]]

TsvVersionOptionsTypeDef

annotationType

• Type: typing.Optional[typing.Literal['CHR_POS', 'CHR_POS_REF_ALT', 'CHR_START_END_ONE_BASE', 'CHR_START_END_REF_ALT_ONE_BASE', 'CHR_START_END_REF_ALT_ZERO_BASE', 'CHR_START_END_ZERO_BASE', 'GENERIC']]

formatToHeader

• Type: typing.Optional[typing.Mapping[typing.Literal['ALT', 'CHR', 'END', 'POS', 'REF', 'START'], str]]

schema

• Type: typing.Optional[typing.Sequence[typing.Mapping[str, typing.Literal['BOOLEAN', 'DOUBLE', 'FLOAT', 'INT', 'LONG', 'STRING']]]]

UntagResourceRequestRequestTypeDef

resourceArn

• Type:
• Required: Yes

tagKeys

• Type: typing.Sequence[str]
• Required: Yes

UpdateAnnotationStoreRequestRequestTypeDef

name

• Type:
• Required: Yes

description

• Type: typing.Optional[str]

UpdateAnnotationStoreResponseTypeDef

id

• Type:
• Required: Yes

reference

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

storeOptions

• Type:
• Required: Yes

storeFormat

• Type: typing.Literal['GFF', 'TSV', 'VCF']
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

UpdateAnnotationStoreVersionRequestRequestTypeDef

name

• Type:
• Required: Yes

versionName

• Type:
• Required: Yes

description

• Type: typing.Optional[str]

UpdateAnnotationStoreVersionResponseTypeDef

storeId

• Type:
• Required: Yes

id

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

name

• Type:
• Required: Yes

versionName

• Type:
• Required: Yes

description

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

UpdateRunGroupRequestRequestTypeDef

id

• Type:
• Required: Yes

name

• Type: typing.Optional[str]

maxCpus

• Type: typing.Optional[int]

maxRuns

• Type: typing.Optional[int]

maxDuration

• Type: typing.Optional[int]

maxGpus

• Type: typing.Optional[int]

UpdateVariantStoreRequestRequestTypeDef

name

• Type:
• Required: Yes

description

• Type: typing.Optional[str]

UpdateVariantStoreResponseTypeDef

id

• Type:
• Required: Yes

reference

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

UpdateWorkflowRequestRequestTypeDef

id

• Type:
• Required: Yes

name

• Type: typing.Optional[str]

description

• Type: typing.Optional[str]

UploadReadSetPartRequestRequestTypeDef

sequenceStoreId

• Type:
• Required: Yes

uploadId

• Type:
• Required: Yes

partSource

• Type: typing.Literal['SOURCE1', 'SOURCE2']
• Required: Yes

partNumber

• Type:
• Required: Yes

payload

• Type: typing.Union[str, bytes, typing.IO[typing.Any]]
• Required: Yes

UploadReadSetPartResponseTypeDef

checksum

• Type:
• Required: Yes

ResponseMetadata

• Type:
• Required: Yes

VariantImportItemDetailTypeDef

source

• Type:
• Required: Yes

jobStatus

• Type: typing.Literal['CANCELLED', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

statusMessage

• Type: typing.Optional[str]

VariantImportItemSourceTypeDef

source

• Type:
• Required: Yes

VariantImportJobItemTypeDef

id

• Type:
• Required: Yes

destinationName

• Type:
• Required: Yes

roleArn

• Type:
• Required: Yes

status

• Type: typing.Literal['CANCELLED', 'COMPLETED', 'COMPLETED_WITH_FAILURES', 'FAILED', 'IN_PROGRESS', 'SUBMITTED']
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

completionTime

• Type: typing.Optional[datetime.datetime]

runLeftNormalization

• Type: typing.Optional[bool]

annotationFields

• Type: typing.Optional[typing.Dict[str, str]]

VariantStoreItemTypeDef

id

• Type:
• Required: Yes

reference

• Type:
• Required: Yes

status

• Type: typing.Literal['ACTIVE', 'CREATING', 'DELETING', 'FAILED', 'UPDATING']
• Required: Yes

storeArn

• Type:
• Required: Yes

name

• Type:
• Required: Yes

description

• Type:
• Required: Yes

sseConfig

• Type:
• Required: Yes

creationTime

• Type:
• Required: Yes

updateTime

• Type:
• Required: Yes

statusMessage

• Type:
• Required: Yes

storeSizeBytes

• Type:
• Required: Yes

VcfOptionsTypeDef

ignoreQualField

• Type: typing.Optional[bool]

ignoreFilterField

• Type: typing.Optional[bool]

VersionDeleteErrorTypeDef

versionName

• Type:
• Required: Yes

message

• Type:
• Required: Yes

VersionOptionsOutputTypeDef

tsvVersionOptions

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.TsvVersionOptionsOutputTypeDef]

VersionOptionsTypeDef

tsvVersionOptions

• Type: typing.Optional[aws_resource_validator.pydantic_models.omics_classes.TsvVersionOptionsTypeDef]

WaiterConfigTypeDef

Delay

• Type: typing.Optional[int]

MaxAttempts

• Type: typing.Optional[int]

WorkflowListItemTypeDef

arn

• Type: typing.Optional[str]

id

• Type: typing.Optional[str]

name

• Type: typing.Optional[str]

status

• Type: typing.Optional[typing.Literal['ACTIVE', 'CREATING', 'DELETED', 'FAILED', 'INACTIVE', 'UPDATING']]

type

• Type: typing.Optional[typing.Literal['PRIVATE', 'READY2RUN']]

digest

• Type: typing.Optional[str]

creationTime

• Type: typing.Optional[datetime.datetime]

metadata

• Type: typing.Optional[typing.Dict[str, str]]

WorkflowParameterTypeDef

description

• Type: typing.Optional[str]

optional

• Type: typing.Optional[bool]